View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6754_high_13 (Length: 261)

Name: NF6754_high_13
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6754_high_13
NF6754_high_13
[»] chr5 (10 HSPs)
chr5 (10-223)||(34788112-34788333)
chr5 (217-248)||(29875203-29875234)
chr5 (217-248)||(42793567-42793598)
chr5 (218-248)||(23090547-23090577)
chr5 (219-248)||(41610372-41610401)
chr5 (220-248)||(12398946-12398974)
chr5 (220-248)||(12399195-12399223)
chr5 (220-248)||(23090298-23090326)
chr5 (220-248)||(34208538-34208566)
chr5 (220-248)||(42757805-42757833)
[»] chr3 (17 HSPs)
chr3 (215-248)||(41349366-41349399)
chr3 (218-248)||(29371787-29371817)
chr3 (218-248)||(39518656-39518686)
chr3 (219-248)||(1352245-1352274)
chr3 (219-248)||(29014689-29014718)
chr3 (219-248)||(36737833-36737862)
chr3 (219-248)||(38855566-38855595)
chr3 (220-248)||(1351996-1352024)
chr3 (220-248)||(18996967-18996995)
chr3 (220-248)||(18997216-18997244)
chr3 (220-248)||(18999506-18999534)
chr3 (220-248)||(18999755-18999783)
chr3 (220-248)||(32677726-32677754)
chr3 (220-248)||(39528749-39528777)
chr3 (220-248)||(39528998-39529026)
chr3 (220-248)||(41349620-41349648)
chr3 (220-248)||(46878984-46879012)
[»] chr2 (5 HSPs)
chr2 (216-248)||(10112335-10112367)
chr2 (216-248)||(43041098-43041130)
chr2 (220-248)||(15234004-15234032)
chr2 (220-248)||(43040849-43040877)
chr2 (220-248)||(44104546-44104574)
[»] chr8 (11 HSPs)
chr8 (217-248)||(27027660-27027691)
chr8 (219-248)||(9739984-9740013)
chr8 (219-248)||(27024432-27024461)
chr8 (219-248)||(33837978-33838007)
chr8 (220-248)||(2509045-2509073)
chr8 (220-248)||(9740235-9740263)
chr8 (220-248)||(25106460-25106488)
chr8 (220-248)||(28379196-28379224)
chr8 (220-248)||(33837729-33837757)
chr8 (220-248)||(45334276-45334304)
chr8 (220-248)||(45334525-45334553)
[»] chr7 (14 HSPs)
chr7 (218-248)||(46467333-46467363)
chr7 (219-248)||(4405358-4405387)
chr7 (219-248)||(29427413-29427442)
chr7 (219-248)||(29890825-29890854)
chr7 (219-248)||(43701550-43701579)
chr7 (220-248)||(6387941-6387969)
chr7 (220-248)||(17904163-17904191)
chr7 (220-248)||(17904412-17904440)
chr7 (220-248)||(26770179-26770207)
chr7 (220-248)||(29723386-29723414)
chr7 (220-248)||(29891075-29891103)
chr7 (220-248)||(37179331-37179359)
chr7 (220-248)||(37179580-37179608)
chr7 (220-248)||(46467584-46467612)
[»] chr1 (10 HSPs)
chr1 (218-248)||(4817267-4817297)
chr1 (219-248)||(4055483-4055512)
chr1 (219-248)||(10737700-10737729)
chr1 (219-248)||(46220508-46220537)
chr1 (219-248)||(47669118-47669147)
chr1 (219-248)||(48565066-48565095)
chr1 (220-248)||(9831503-9831531)
chr1 (220-248)||(18126851-18126879)
chr1 (220-248)||(33020206-33020234)
chr1 (220-248)||(47669368-47669396)
[»] chr6 (5 HSPs)
chr6 (219-248)||(27312113-27312142)
chr6 (219-248)||(27312365-27312394)
chr6 (219-248)||(32274433-32274462)
chr6 (220-248)||(8504733-8504761)
chr6 (220-248)||(29302520-29302548)
[»] chr4 (4 HSPs)
chr4 (219-248)||(19256185-19256214)
chr4 (219-248)||(36016278-36016307)
chr4 (216-248)||(8956025-8956057)
chr4 (220-248)||(19257109-19257137)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 34788333 - 34788112
Alignment:
Q  10 gatggacatcacttgtttaatctaaaaattaggactggattgacttgaa--------ttgggggagaaaaatgacacacaatccaaacaaggaccagaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||    
T  34788333 gatggacatcacttgtttaatctaaaaattaggactggattgacttgaaagacattattgggggagaaaaatgacacacaatccaaacaaggaccataaa 34788234  T
Q  102 tgcaaattaagcttgactattatttatttgataaaatcaaattcataaaatgaaaggaaaccataaaatacagttaagtagagatttcaactaatttgat 201  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34788233 tgcaaattaagcctgactattatttatttgataaaatcaaattcataaaatgaaaggaaaccataaaatacatttaagtagagatttcaactaatttgat 34788134  T
Q  202 aatggttggataattatatact 223  Q
    ||||||||||||||||||||||    
T  34788133 aatggttggataattatatact 34788112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 29875234 - 29875203
Alignment:
Q  217 atatactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||||    
T  29875234 atatactccctccattccttttcttttgatgt 29875203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 42793598 - 42793567
Alignment:
Q  217 atatactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||||    
T  42793598 atatactccctccattccttttcttttgatgt 42793567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 23090577 - 23090547
Alignment:
Q  218 tatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||    
T  23090577 tatactccctccattccttttcttttgatgt 23090547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 41610372 - 41610401
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  41610372 atactccctccattccttttcttttgatgt 41610401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 12398946 - 12398974
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgt 12398974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 12399223 - 12399195
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgt 12399195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 23090298 - 23090326
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgt 23090326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 34208538 - 34208566
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgt 34208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 42757805 - 42757833
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgt 42757833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 41349366 - 41349399
Alignment:
Q  215 ttatatactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||||||    
T  41349366 ttatatactccctccattccttttcttttgatgt 41349399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 29371817 - 29371787
Alignment:
Q  218 tatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||    
T  29371817 tatactccctccattccttttcttttgatgt 29371787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 39518686 - 39518656
Alignment:
Q  218 tatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||    
T  39518686 tatactccctccattccttttcttttgatgt 39518656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 1352274 - 1352245
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  1352274 atactccctccattccttttcttttgatgt 1352245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 29014689 - 29014718
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  29014689 atactccctccattccttttcttttgatgt 29014718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 36737833 - 36737862
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgt 36737862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 38855595 - 38855566
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgt 38855566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 1351996 - 1352024
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgt 1352024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 18996967 - 18996995
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgt 18996995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 18997244 - 18997216
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgt 18997216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 18999506 - 18999534
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgt 18999534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 18999783 - 18999755
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgt 18999755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 32677754 - 32677726
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgt 32677726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 39528749 - 39528777
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgt 39528777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 39529026 - 39528998
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgt 39528998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 41349648 - 41349620
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgt 41349620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 46879012 - 46878984
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgt 46878984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 10112335 - 10112367
Alignment:
Q  216 tatatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||||    
T  10112335 tatatactccctccattccttttcttttgatgt 10112367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 43041130 - 43041098
Alignment:
Q  216 tatatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||||    
T  43041130 tatatactccctccattccttttcttttgatgt 43041098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 15234032 - 15234004
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgt 15234004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 43040849 - 43040877
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgt 43040877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 44104546 - 44104574
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgt 44104574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 27027691 - 27027660
Alignment:
Q  217 atatactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||||    
T  27027691 atatactccctccattccttttcttttgatgt 27027660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 9739984 - 9740013
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  9739984 atactccctccattccttttcttttgatgt 9740013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 27024432 - 27024461
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  27024432 atactccctccattccttttcttttgatgt 27024461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 33838007 - 33837978
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  33838007 atactccctccattccttttcttttgatgt 33837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 2509073 - 2509045
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgt 2509045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 9740263 - 9740235
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgt 9740235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 25106488 - 25106460
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgt 25106460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 28379224 - 28379196
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgt 28379196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 33837729 - 33837757
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgt 33837757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 45334276 - 45334304
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgt 45334304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 45334553 - 45334525
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  45334553 tactccctccattccttttcttttgatgt 45334525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 46467333 - 46467363
Alignment:
Q  218 tatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||    
T  46467333 tatactccctccattccttttcttttgatgt 46467363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 4405387 - 4405358
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  4405387 atactccctccattccttttcttttgatgt 4405358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 29427442 - 29427413
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgt 29427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 29890825 - 29890854
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  29890825 atactccctccattccttttcttttgatgt 29890854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 43701550 - 43701579
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  43701550 atactccctccattccttttcttttgatgt 43701579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 6387969 - 6387941
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  6387969 tactccctccattccttttcttttgatgt 6387941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 17904163 - 17904191
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgt 17904191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 17904440 - 17904412
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgt 17904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 26770179 - 26770207
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgt 26770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 29723414 - 29723386
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgt 29723386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 29891103 - 29891075
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  29891103 tactccctccattccttttcttttgatgt 29891075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 37179331 - 37179359
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgt 37179359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 37179608 - 37179580
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgt 37179580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 46467612 - 46467584
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgt 46467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 4817267 - 4817297
Alignment:
Q  218 tatactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||||    
T  4817267 tatactccctccattccttttcttttgatgt 4817297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 4055483 - 4055512
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  4055483 atactccctccattccttttcttttgatgt 4055512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 10737700 - 10737729
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgt 10737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 46220537 - 46220508
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  46220537 atactccctccattccttttcttttgatgt 46220508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 47669118 - 47669147
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  47669118 atactccctccattccttttcttttgatgt 47669147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 48565095 - 48565066
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  48565095 atactccctccattccttttcttttgatgt 48565066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 9831503 - 9831531
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgt 9831531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 18126851 - 18126879
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgt 18126879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 33020206 - 33020234
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgt 33020234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 47669396 - 47669368
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgt 47669368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 27312113 - 27312142
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgt 27312142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 27312394 - 27312365
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  27312394 atactccctccattccttttcttttgatgt 27312365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 32274433 - 32274462
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgt 32274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 8504733 - 8504761
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgt 8504761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 29302548 - 29302520
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgt 29302520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 19256185 - 19256214
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  19256185 atactccctccattccttttcttttgatgt 19256214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 36016278 - 36016307
Alignment:
Q  219 atactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgt 36016307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 8956057 - 8956025
Alignment:
Q  216 tatatactccctccattccttttcttttgatgt 248  Q
    ||||||||||||||||||||||| |||||||||    
T  8956057 tatatactccctccattcctttttttttgatgt 8956025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 19257137 - 19257109
Alignment:
Q  220 tactccctccattccttttcttttgatgt 248  Q
    |||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgt 19257109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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