View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_high_2 (Length: 558)
Name: NF6754_high_2
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 22 - 545
Target Start/End: Complemental strand, 45380064 - 45379541
Alignment:
| Q |
22 |
caagagcaaaatcaacttcactcacactctcaacaggagtgccaattacaggagtttctgcagtcaaattacctgaaaggtcttgactcttccaaagatc |
121 |
Q |
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| T |
45380064 |
caagagcaaaatcaacttcactcacactctcaacaggagtgccaattacaggagtttctgcagtcaaattacctgaaaggtcttgactcttccaaagatc |
45379965 |
T |
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| Q |
122 |
ctggctcttccccaaatcctggctaaacaagtcaattccaaattcaccctccaccttaatccttgacaaaccaaagtccgagatcttcccgcgaaactca |
221 |
Q |
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| T |
45379964 |
ctggctcttccccaaatcctggctaaacaagtcaactccaaattcaccctccaccttaatccttgacaaaccaaagtccgagatcttcccgcgaaactca |
45379865 |
T |
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| Q |
222 |
gcatcaagcaacacattacttggcttaatatcaccatgaatcacaggtggatcacatccaaggtgcaaaaactccaatgctctagcaacatccataatta |
321 |
Q |
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| T |
45379864 |
gcatcaagcaacacattacttggcttaatatcaccatgaatcacaggtggatcacatccaaggtgcaaaaactccaatgctctagcaacatccataatta |
45379765 |
T |
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| Q |
322 |
tacaaaatcttctctcccaactcaaaccaaaacactcatcaccaaaaagtgactcttgcaagcttgtattaggcatatactcataaaccaaaaccctctt |
421 |
Q |
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| T |
45379764 |
tacaaaaccttctctcccaactcaaaccaaaacactcatcaccaaaaagtgactcttgcaagcttgtattaggcatatactcataaaccaaaaccctctt |
45379665 |
T |
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| Q |
422 |
attcttttcaacacaatagcccaaaagggtcaccagaaaaggtgatctcaaccctccaagaatctgcaactcattttgaaactctctctctgattgcaaa |
521 |
Q |
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| T |
45379664 |
attcttttcaacacaatagcccaaaagggtcaccagaaaaggtgatctcaaccctccaagaatctgcaactcattttgaaactctctctctgattgcaaa |
45379565 |
T |
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| Q |
522 |
gacaaagagtccaaccttttgatg |
545 |
Q |
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| T |
45379564 |
gacaaagagtccaaccttttgatg |
45379541 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 12953772 - 12953816
Alignment:
| Q |
234 |
acattacttggcttaatatcaccatgaatcacaggtggatcacat |
278 |
Q |
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|||||||| || ||||||||||||||||||||||| |||| |||| |
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| T |
12953772 |
acattactaggtttaatatcaccatgaatcacaggaggattacat |
12953816 |
T |
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