View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6754_high_7 (Length: 329)
Name: NF6754_high_7
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 9322869 - 9323194
Alignment:
| Q |
1 |
aactggatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaatctaaccaatctgtaagataaaacacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322869 |
aactggatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaatctaaccaatctgtaagataaaacacct |
9322968 |
T |
|
| Q |
101 |
ccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9322969 |
ccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcattg |
9323068 |
T |
|
| Q |
201 |
gctactttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataaatcggtcaag |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9323069 |
gcttctttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataagtcggtcaag |
9323168 |
T |
|
| Q |
301 |
acaataatcagcaaccagtgcattcat |
327 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
9323169 |
acaataatc-gcaaccagtgcattcat |
9323194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 11424252 - 11423929
Alignment:
| Q |
1 |
aactggatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaatctaa-ccaatctgtaagataaaacacc |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| || |||| |
|
|
| T |
11424252 |
aactggatttcccatttccgacatcaaagttgcatcgaaacattccgagcctcgaccttctgctactcgcaatcttagccaatctgtaagatcaa-cacc |
11424154 |
T |
|
| Q |
100 |
tccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcatt |
199 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| | ||||||||||||||||| ||||||||| |
|
|
| T |
11424153 |
tccctcctcaccagttatcacatcaccagcacaccttccggttaaaagttccaaaagtatcacgccgaaagcatagacatctgacttgaaagaaggcatt |
11424054 |
T |
|
| Q |
200 |
ggctactttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataaatcggtcaa |
299 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| ||||||||||||||| | ||||| |||| ||||||||||||||||||||| ||||| || |
|
|
| T |
11424053 |
ggcttcttggaagcagctaactctggtgcgcgataacctaagacaccggcgtcaagaatctgctcaa---tagtaccagcttgagtcataagtcggtgaa |
11423957 |
T |
|
| Q |
300 |
gacaataatcagcaaccagtgcattcat |
327 |
Q |
| |
|
||||||||||||| || |||||||||| |
|
|
| T |
11423956 |
gacaataatcagcgacacgtgcattcat |
11423929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32304302 - 32304523
Alignment:
| Q |
1 |
aactggatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaatctaa-ccaatctgtaagataaaacacc |
99 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||| || ||| | |||||||| ||||| || |||| |
|
|
| T |
32304302 |
aactagatttcccatttctgacatcaaagttgcatcaaaacattccgagactcgaccttctgctactcacagtcttagccaatctgcaagatcaa-cacc |
32304400 |
T |
|
| Q |
100 |
tccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaaggcatt |
199 |
Q |
| |
|
||||||||| | ||||| |||||||| |||||| |||| ||||||||||| ||||| ||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
32304401 |
tccctcctcactagttatcacatcacaagcacaccttccggttaaaagttcaaaaagcatcacaccgaaaacaaagacatctgacttgaaggaaggcatt |
32304500 |
T |
|
| Q |
200 |
ggctactttgaagcagctaactc |
222 |
Q |
| |
|
| || ||| ||||||| |||||| |
|
|
| T |
32304501 |
gtcttcttggaagcagttaactc |
32304523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 9330886 - 9330972
Alignment:
| Q |
6 |
gatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaatc-taaccaatctgtaagat |
91 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
9330886 |
gatttcccatttctaacgtcaaagctgcatcgaaacattcggagcctcgaccttatgctactcgcaatcttagccaatctgtaagat |
9330972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11425679 - 11425636
Alignment:
| Q |
1 |
aactggatttcccatttctaacatcaaagttgcatcgaaacatt |
44 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
11425679 |
aactggattccccatttctaacatcaaagtagcatcaaaacatt |
11425636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University