View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6754_low_1 (Length: 665)

Name: NF6754_low_1
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6754_low_1
NF6754_low_1
[»] chr2 (1 HSPs)
chr2 (20-665)||(45378922-45379564)
[»] chr1 (1 HSPs)
chr1 (586-665)||(5568434-5568513)


Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 20 - 665
Target Start/End: Original strand, 45378922 - 45379564
Alignment:
Q  20 agcttgggtccatccctttctttcctttttctaatcctcatatcccaattgccaatattaatctcattccattatatgaataaagtaaa-tagttggtga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45378922 agcttgggtccatccctttctttcctttttctaatcctcatatcccaattgccaatattaatctcattccattatatgaataaagtaaaatagttggtga 45379021  T
Q  119 tggaaaccataaatcaaggaaaagaagnnnnnnnnnctgaaaacatatttaacaatagtagaatacagctcctcctcctctaatgattatctaattgtaa 218  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45379022 tggaaaccataaatcaaggaaaagaagaaaaaaaa-ctgaaaacatatttaacaatagtagaatacagctcctcctcctctaatgattatctaattgtaa 45379120  T
Q  219 agcaatccactttggataccaaattcattaaagtaatcaaaaaaccatagtcttcatcttcttcttctttttgatcatcaatattcattcattcacatca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  45379121 agcaatccactttggataccaaattcattaaagtaatcaaaaaaccatagtcttcatctt---cttctttttgatcatcaatattcattcattcacatca 45379217  T
Q  319 cttaacaccatgccttcaagacaattaacttctacaacttccaatattttcaccaaaccaaagtttcttttcatagcactaaccatttcagcttctgttg 418  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45379218 cataacaccatgccttcaagacaattaacttctacaacttccaatattttcaccaaaccaaagtttcttttcatagcactaaccatttcagcttctgttg 45379317  T
Q  419 tcatcttcttctcaatactttacttcctttatcatctttggcattctcttgtacatagagctaagaccattccttttgatgcaagtgctcctttgaagct 518  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45379318 tcatcttcttctcaatactttacttcctttatcatctttggctttctcttgtacatagagctaagaccattccttttgatgcaagttctcctttgaagct 45379417  T
Q  519 acaaagattttcttacaaagagctaaaggttgctaccaatgtttttgacactgctaatataattggcaaaggtggttctggtactgttttcaagggagta 618  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45379418 acaaagattttcttacaaagagttaaaggttgctaccaatgtttttgacactgctaatataattggcaaaggtggttctggtactgttttcaagggagta 45379517  T
Q  619 cttaaagatggaaaattcattgccatcaaaaggttggactctttgtc 665  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  45379518 ctgaaagatggaaaattcattgccatcaaaaggttggactctttgtc 45379564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 586 - 665
Target Start/End: Original strand, 5568434 - 5568513
Alignment:
Q  586 aaaggtggttctggtactgttttcaagggagtacttaaagatggaaaattcattgccatcaaaaggttggactctttgtc 665  Q
    |||||||  |||| || ||||||||||||| ||||||||| ||||||||| |||||||||||  | |||||||| |||||    
T  5568434 aaaggtgagtctgatattgttttcaagggaatacttaaagttggaaaattgattgccatcaagtgcttggactcgttgtc 5568513  T

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