View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_10 (Length: 321)
Name: NF6754_low_10
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 33050350 - 33050651
Alignment:
| Q |
1 |
ctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatggtatatggatacatgatgctcaaattacataacaggttaaaagtcttggta |
100 |
Q |
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| T |
33050350 |
ctcttgatggctacaatcaaaattggtgaggaacaaaatgatgaagatggtatctggatacatgatgctcaaattacataacatgttaaaagtcttggta |
33050449 |
T |
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| Q |
101 |
ctctaaattagattattcaattaatagaaagataagatttgtagataatagtatagattatgttgaaggaaatggtaatgtgttgattcatagtagttta |
200 |
Q |
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| T |
33050450 |
ctctaaattagattattcaattaatagaaagataagattcgcagataatagtatcgattatgttgaaggaaatggtaatgtgttgattcatagtagttta |
33050549 |
T |
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| Q |
201 |
cttgtaacattaacaactcgataaatgttattgattctcttcgatttctcccaaaccatattcttttcaaattttcccaatttcctttttgttctaacac |
300 |
Q |
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| T |
33050550 |
cttgtaacattaacaactcaataaaagtttttgattctcttcgatttctcccaaaccatattcttttcaaattttcccaatttcctttttgttctaacac |
33050649 |
T |
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| Q |
301 |
ca |
302 |
Q |
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|| |
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| T |
33050650 |
ca |
33050651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 5313508 - 5313698
Alignment:
| Q |
2 |
tcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatggtatatggatacatgatgctcaaattacataacaggttaaaa-gtcttggta |
100 |
Q |
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| T |
5313508 |
tcttgttggctacaatcaaaactgatgatgaacataatggtgaa--tggtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggtt |
5313605 |
T |
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| Q |
101 |
ctctaaattagattattcaattaatagaaagataagatttgtagataatagtatagattatgttgaaggaaatggtaatgtgttgattcatag |
193 |
Q |
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| T |
5313606 |
ctctgagttagatggttcaattagtaaaaagacaagatttgcaaataatagtatagtttgtgttaaaggaactagtaaagtattgattcatag |
5313698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 45495828 - 45495767
Alignment:
| Q |
95 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
156 |
Q |
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| T |
45495828 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45495767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 45503570 - 45503509
Alignment:
| Q |
95 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
156 |
Q |
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| T |
45503570 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45503509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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