View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_11 (Length: 313)
Name: NF6754_low_11
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 45461528 - 45461815
Alignment:
| Q |
15 |
catcagattcatcaaagggttaagtgacaaaatggaaaaaaggggcaatttaagaggagagagaatcttaattcatcttctccaattttccaaggatttc |
114 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461528 |
catcagattcatccaagggttaagtgacaaaatggaaaaaaggggcaatttaagaggagagagaatcttaattcatcttctccaattttccaaggatttc |
45461627 |
T |
|
| Q |
115 |
ttcaaccctccctacttggttccgtgcaagttgcaaacctcttttgagtttacttttgttaatcattttatatcgtcccaccattatcatcatttaagct |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461628 |
ttcaaccctccctgcttggttccgtgcaagttgcaaacctcttttgagtttacttttgttaatcattttatatcgtcccaccattatcatcatttaagct |
45461727 |
T |
|
| Q |
215 |
tcgttttctgttggtatgttttcaatctagtcagttggtttttgcccctcaaccctcaaacatcatatctatgttccgttgatgatgt |
302 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45461728 |
tcgttttctgttggtatattttcaatctagtcagttggtttttgcccctcaaccctcaaacatcatatctatgttctgttgatgatgt |
45461815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 38638913 - 38639200
Alignment:
| Q |
15 |
catcagattcatcaaagggttaagtgacaaaatggaaaaaaggggcaatttaagaggagagagaatcttaattcatcttctccaattttccaaggatttc |
114 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638913 |
catcagattcatccaagggttaagtgacaaaatggaaaaaaggggcaatttaagaggagagagaatcttaattcatcttctccaattttccaaggatttc |
38639012 |
T |
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| Q |
115 |
ttcaaccctccctacttggttccgtgcaagttgcaaacctcttttgagtttacttttgttaatcattttatatcgtcccaccattatcatcatttaagct |
214 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38639013 |
ttcaaccctccctgcttggttccgtgcaagttgcaaacctcttttgagtttacttttgttaatcattttatatagtcccaccattatcatcatttaagct |
38639112 |
T |
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| Q |
215 |
tcgttttctgttggtatgttttcaatctagtcagttggtttttgcccctcaaccctcaaacatcatatctatgttccgttgatgatgt |
302 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38639113 |
tcgttttctgttggtatattttcaatctagtcagttggtttttgcccctcaaccctcaaacatcatatctatgttctgttgatgatgt |
38639200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 40101352 - 40101067
Alignment:
| Q |
15 |
catcagattcatcaaagggttaagtgacaaaatggaaaaaaggggcaatttaagaggagagagaatcttaattcatcttctccaattttccaaggatttc |
114 |
Q |
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||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40101352 |
catcagattcatccaagggttaaatgacaaaattgaaaaaaggggcaatttaagaggagagagaatcttaattcatcttctccaattttccaaggattt- |
40101254 |
T |
|
| Q |
115 |
ttcaaccctccctacttggttccgtgcaagttgcaaacctcttttgagtttacttttgttaatcattttatatcgtcccaccattatcatcatttaagct |
214 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40101253 |
ttcaaccctccctgcttggttccgtgcaagttgcaa-cctcttttgagtttacttttgttaatcattttatatcgttccaccattatcatcatttaagct |
40101155 |
T |
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| Q |
215 |
tcgttttctgttggtatgttttcaatctagtcagttggtttttgcccctcaaccctcaaacatcatatctatgttccgttgatgatgt |
302 |
Q |
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||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
40101154 |
tcgttttctgttggtatattttcaatctattcagttagtttttgcccctcaaccctcaaacattatatctatgttctattgatgatgt |
40101067 |
T |
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