View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_12 (Length: 306)
Name: NF6754_low_12
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 37 - 299
Target Start/End: Complemental strand, 11917496 - 11917234
Alignment:
| Q |
37 |
tgatttcaactgcagcaccttctacccaaatcataagagctttcacgattatccctaccttctgctggtagtccaccatatccaactttgatttcatgag |
136 |
Q |
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| T |
11917496 |
tgatttcaactgcagcaccttctacccaaatcataagagctttcacgattatccctaccttctgctggtagtccaccatatccaactttgatttcatgag |
11917397 |
T |
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| Q |
137 |
tctcatccaacaaatcagaaaccctaacctggatatttttatatatactttcagcagtttttacaaatgcctcttcaatattttctctagatttcgccga |
236 |
Q |
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| T |
11917396 |
tctcatccaacaaatcagaaaccctaacctagatatttttatatatactttctgcagtttttacaaatgcctcttcaatattttctctagatttcgccga |
11917297 |
T |
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| Q |
237 |
aacctccataaacatcaaaccattctcctttgcgaatttctcaccttcttcggtactcacaac |
299 |
Q |
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| T |
11917296 |
aacctccataaacatcaaaccattctcctttgtgaatttctcaccttcttcggtactcacaac |
11917234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 34 - 303
Target Start/End: Original strand, 11906833 - 11907096
Alignment:
| Q |
34 |
tgttgatttcaactgcagcaccttctacccaaatcataagagctttcacgattatccctaccttctgctggtagtccaccatatccaactttgatttcat |
133 |
Q |
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| T |
11906833 |
tgttgatttcagctgcagcagcttctacccaaagcataagagctctcacgattatccctaccttctgcag------caacatatccaactttgattccat |
11906926 |
T |
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| Q |
134 |
gagtctcatccaacaaatcagaaaccctaacctggatatttttatatatactttcagcagtttttacaaatgcctcttcaatattttctctagatttcgc |
233 |
Q |
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| T |
11906927 |
gagtctcatccaacacatcagaaaccctaacctggatatttttatatatactttcagcagtttttacaaatgcctcttcaatattttctctagatttcgc |
11907026 |
T |
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| Q |
234 |
cgaaacctccataaacatcaaaccattctcctttgcgaatttctcaccttcttcggtactcacaacacga |
303 |
Q |
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| T |
11907027 |
cgaaacctccataaacatcaaaccattctcctttgcgaatttctcaccttctttggtactcacaacacga |
11907096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 112 - 298
Target Start/End: Original strand, 11930936 - 11931122
Alignment:
| Q |
112 |
ccatatccaactttgatttcatgagtctcatccaacaaatcagaaaccctaacctggatatttttatatatactttcagcagtttttacaaatgcctctt |
211 |
Q |
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| T |
11930936 |
ccatatccaactttgatttcatgagtctcatccaacaaatcagaaaccctaacctggatatttttatatatactttctgcagtttttacaaatgcctctt |
11931035 |
T |
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| Q |
212 |
caatattttctctagatttcgccgaaacctccataaacatcaaaccattctcctttgcgaatttctcaccttcttcggtactcacaa |
298 |
Q |
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| T |
11931036 |
caatattttctctagatttcgccgaaacctccataaacatcaaaccattctcctttgcaaatttctcaccttcttcagtactaacaa |
11931122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 116 - 302
Target Start/End: Original strand, 11902189 - 11902375
Alignment:
| Q |
116 |
atccaactttgatttcatgagtctcatccaacaaatcagaaaccctaacctggatatttttatatatactttcagcagtttttacaaatgcctcttcaat |
215 |
Q |
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|||||||||||||| |||||||||||| ||||| | || | | | | ||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902189 |
atccaactttgattccatgagtctcattcaacacaccaacatctccatcctcaatctttttatatatactttcagcagtttttacaaatgcctcttcaat |
11902288 |
T |
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| Q |
216 |
attttctctagatttcgccgaaacctccataaacatcaaaccattctcctttgcgaatttctcaccttcttcggtactcacaacacg |
302 |
Q |
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| T |
11902289 |
attttcactagattttgccgaaacctccataaacatcaaaccattctccttcgcgaatttctcagcttcttcggtactcacaacacg |
11902375 |
T |
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