View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6754_low_13 (Length: 294)

Name: NF6754_low_13
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6754_low_13
NF6754_low_13
[»] chr5 (10 HSPs)
chr5 (10-266)||(29953510-29953766)
chr5 (7-274)||(29944569-29944836)
chr5 (1-274)||(29995261-29995534)
chr5 (1-274)||(30007050-30007323)
chr5 (24-262)||(30043698-30043936)
chr5 (1-274)||(30068192-30068466)
chr5 (10-274)||(29946541-29946805)
chr5 (1-267)||(29964777-29965043)
chr5 (1-267)||(30009755-30010021)
chr5 (7-194)||(30001014-30001201)
[»] chr6 (1 HSPs)
chr6 (47-119)||(31950819-31950891)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 29953766 - 29953510
Alignment:
Q  10 aaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagttcggacatag 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||| |||||||||||||| | ||    
T  29953766 aaatctttctcttcaatcattctttcatttcctacttcattttgtatctcatcttgaaggattttcattacccttggatgtcttagaagttcggataaag 29953667  T
Q  110 cccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgattttcttcatt 209  Q
    ||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29953666 cccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaatgattttcttcatt 29953567  T
Q  210 tcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatg 266  Q
    | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  29953566 ttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatg 29953510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 29944836 - 29944569
Alignment:
Q  7 ttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagttcggaca 106  Q
    |||||||| || |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  29944836 ttcaaatccttttcttcaaccattctcttatttcctacttcattttgtatttcatcttgaagatttttcatcactcttggatgccttaaaagttcggata 29944737  T
Q  107 tagcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgattttcttc 206  Q
     |||||| ||||| | ||| |||||||||  || || |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||    
T  29944736 aagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagtaaaatagctttgatgttagttcgatcaatgacatgattttgttc 29944637  T
Q  207 atttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatgatgagttt 274  Q
    | | ||  |||||||| |||||| | |||| |  ||||||||||| ||||||||||||||| ||||||    
T  29944636 actcccatgatcaatgttttggtgcttaaaagtgagaagtatgtctacaaagtcttcatgacgagttt 29944569  T

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Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 29995534 - 29995261
Alignment:
Q  1 aacttgttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagtt 100  Q
    ||||| |||| ||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  29995534 aacttcttcatatctttctcctcaatctttcttttatttcctacttcattttgtatctcatcttgaagctttttcatcactcttggatgtcttaaaagtt 29995435  T
Q  101 cggacatagcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgatt 200  Q
    | || | |||||||||||||| ||| ||||||||||| ||||||||||| | |||||| || ||||| ||||||||||||||||||||||||||  ||||    
T  29995434 cagataaagcccattcaatcgaggtagcagatgtatcgattgctgccactatcatgtcgagcaaaatagccttgatgttagttcgatcaatgacgagatt 29995335  T
Q  201 ttcttcatttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatgatgagttt 274  Q
    || ||||    | | |||||||||||||| ||||| ||||||||||||||| ||||| |||| |||||||||||    
T  29995334 ttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctttatgatgagttt 29995261  T

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Target: chr5; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 30007323 - 30007050
Alignment:
Q  1 aacttgttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagtt 100  Q
    ||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30007323 aacttcttcagatccttctcttcaaccattcttttatttcctacttcattttgtatctcatcttgaagaattttcatcactcttgaatgccttagaagtt 30007224  T
Q  101 cggacatagcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgatt 200  Q
    | || | |||||| ||||||| ||| |||||||||| || || |||| | | |||||| || ||||| ||||||||||||||||||||||||||  ||||    
T  30007223 cagataaagcccactcaatcgtggtagcagatgtatgaactgatgccgctatcatgtcgagcaaaatagccttgatgttagttcgatcaatgacgagatt 30007124  T
Q  201 ttcttcatttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatgatgagttt 274  Q
    || ||||    | | |||||||||||||| ||||| ||||||||||||||| ||||||||||||| | ||||||    
T  30007123 ttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaagtcttcattacgagttt 30007050  T

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Target: chr5; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 30043698 - 30043936
Alignment:
Q  24 aaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagttcggacatagcccattcaatcgcg 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| || | |||||||||||||| |    
T  30043698 aaccattcttttatttcctacttcattttgtatctcatcttgaagctttttcatcactcttggatgtcttaaaagttcagataaagcccattcaatcgag 30043797  T
Q  124 gtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgattttcttcatttcctagatcaatgg 223  Q
    || ||||||||||||||||||||||| | |||||| || ||||| ||||||||||||||||||||||||||  |||||| ||||    | | ||||||||    
T  30043798 gtagcagatgtatcaattgctgccactatcatgtcgagcaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcaatatcaatgg 30043897  T
Q  224 tttggttcataaatgaaagaagtatgtcaacaaagtctt 262  Q
    |||||| ||||| ||||||||||||||| ||||| ||||    
T  30043898 tttggtgcataattgaaagaagtatgtctacaaaatctt 30043936  T

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Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 30068192 - 30068466
Alignment:
Q  1 aacttgttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagtt 100  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||     
T  30068192 aacttcttcaaatccttctcttcaaccattcttttatttcctacttcattttgtatctcatcttgaagaattttcatcactcttggatgccttaaaagtg 30068291  T
Q  101 cggacatagcccatt-caatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgat 199  Q
    | || | ||||||||  ||||| ||| ||||||||||||||||||||||| | |||||| || ||||| || |||||||||| ||||||||| ||  |||    
T  30068292 cagataaagcccattaaaatcgaggtagcagatgtatcaattgctgccactatcatgtcgagcaaaatagctttgatgttagatcgatcaattacgagat 30068391  T
Q  200 tttcttcatttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatgatgagttt 274  Q
    ||| ||||    | | |||||||||||| | ||||| ||||||||||||||| || || |||| |||||||||||    
T  30068392 tttgttcaccctcgacatcaatggtttgatgcataattgaaagaagtatgtctacgaaatctttatgatgagttt 30068466  T

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Target: chr5; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 29946805 - 29946541
Alignment:
Q  10 aaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagttcgga-cata 108  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||| ||||| |||||| ||  | |    
T  29946805 aaatctttctcttcgaccattcttttatttcctacttcattttgtatatcatcttgaagggttttcatcactcttggattccttaaaagttcagataaaa 29946706  T
Q  109 gcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgattttcttcat 208  Q
    ||||||||||||||||| |||||||| ||||||||||||| || | |||||||||| | |||||| ||||| | ||||||||| ||||| || | |||||    
T  29946705 gcccattcaatcgcggtagcagatgtttcaattgctgccataaccgtgtctagtaata-tgccttaatgtttggtcgatcaataacatgtttctgttcat 29946607  T
Q  209 ttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatgatgagttt 274  Q
    |   | |||| |||||||||||| ||| ||| || |||||||| || |||||||||||||||||||    
T  29946606 tcttttgatctatggtttggttcttaattgagagtagtatgtctacgaagtcttcatgatgagttt 29946541  T

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Target: chr5; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 29965043 - 29964777
Alignment:
Q  1 aacttgttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagtt 100  Q
    ||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||    
T  29965043 aacttcttcaaatcattctcttcgaccattcttttatttcctacttcattttgtatctcatcttgaagctttttcatcactcttggatgtctgaaaagtt 29964944  T
Q  101 cggacatagcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgatt 200  Q
    | || | |||||| ||||||| ||| |  | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||| |||  | |    
T  29964943 cagataaagcccactcaatcgtggtagtggctgtatcaattcctgccacaatcatgtctagtaaaattgccttgatgttagttctgtcaataacaccact 29964844  T
Q  201 ttcttcatttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatga 267  Q
    || ||||||| || |||| |  ||||||| || || ||| |||||||| ||||  || |||||||||    
T  29964843 ttgttcattttctggatctaccgtttggtgcacaattgagagaagtatatcaatgaaatcttcatga 29964777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 30009755 - 30010021
Alignment:
Q  1 aacttgttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagtt 100  Q
    ||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||    
T  30009755 aacttcttcaaatcattctcttcgaccattcttttatttcctacttcattttgtatctcatcttgaagctttttcatcactcttggatgtctgaaaagtt 30009854  T
Q  101 cggacatagcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgacatgatt 200  Q
    | || | |||||| ||||||| ||| |  | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||| |||  | |    
T  30009855 cagataaagcccactcaatcgtggtagtggctgtatcaattcctgccacaatcatgtctagtaaaattgccttgatgttagttctgtcaataacaccact 30009954  T
Q  201 ttcttcatttcctagatcaatggtttggttcataaatgaaagaagtatgtcaacaaagtcttcatga 267  Q
    || ||||||| || |||| |  ||||||| || || ||| |||||||| ||||  || |||||||||    
T  30009955 ttgttcattttctggatctaccgtttggtgcacaattgagagaagtatatcaatgaaatcttcatga 30010021  T

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Target: chr5; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 30001201 - 30001014
Alignment:
Q  7 ttcaaatctttctcttcaaccattctttcatttcctacttcattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagttcggaca 106  Q
    |||||||| || |||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| || |    
T  30001201 ttcaaatccttttcttcaaccattctcttatttcctacttcattttgtatttcatcttgaagaattttcatcactcttggatgccttaaaagttcagata 30001102  T
Q  107 tagcccattcaatcgcggtcgcagatgtatcaattgctgccacaagcatgtctagtaaaattgccttgatgttagttcgatcaatgac 194  Q
     |||||| || ||| || | | |||||||||||||| |||| | | |||||| || ||||| ||||||||| | ||||||||||||||    
T  30001101 aagcccactctatcacgtttgaagatgtatcaattgatgcccctatcatgtcgagcaaaatagccttgatgatcgttcgatcaatgac 30001014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 31950819 - 31950891
Alignment:
Q  47 cattttgtatctcatcttgaagatttttcatcactcttggatgccttagaagttcggacatagcccattcaat 119  Q
    |||||| || ||||| |||||| || ||||||||  ||||||||||||  ||||| ||||| |||||||||||    
T  31950819 cattttctagctcattttgaagtttcttcatcacatttggatgccttaagagttcagacatggcccattcaat 31950891  T

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