View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_18 (Length: 253)
Name: NF6754_low_18
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 51856515 - 51856281
Alignment:
| Q |
10 |
gagatggacatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
109 |
Q |
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| T |
51856515 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
51856416 |
T |
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| Q |
110 |
ttacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaa |
209 |
Q |
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| T |
51856415 |
ttacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaa |
51856316 |
T |
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| Q |
210 |
tgtagatacttannnnnnngctctgtgatgatgtc |
244 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
51856315 |
tgtagatacttatttttttgctctgtgatgatgtc |
51856281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 8945692 - 8945467
Alignment:
| Q |
19 |
atcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945692 |
atcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaa |
8945593 |
T |
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| Q |
119 |
aataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatac |
218 |
Q |
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| T |
8945592 |
aataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatac |
8945493 |
T |
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| Q |
219 |
ttannnnnnngctctgtgatgatgtc |
244 |
Q |
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||| |||||||||||||||| |
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| T |
8945492 |
ttatttttttgctctgtgatgatgtc |
8945467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 128420 - 128536
Alignment:
| Q |
9 |
tgagatggacatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggc |
108 |
Q |
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||||||| | || ||||||||||||||||||| | ||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||| |
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| T |
128420 |
tgagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggt |
128518 |
T |
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| Q |
109 |
attacagaaaaataaaat |
126 |
Q |
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|||||||||||| ||||| |
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| T |
128519 |
attacagaaaaaaaaaat |
128536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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