View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6754_low_25 (Length: 201)

Name: NF6754_low_25
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6754_low_25
NF6754_low_25
[»] chr6 (9 HSPs)
chr6 (4-80)||(27629956-27630032)
chr6 (1-80)||(27272830-27272909)
chr6 (141-186)||(27629853-27629898)
chr6 (4-74)||(28162533-28162603)
chr6 (4-62)||(4525162-4525220)
chr6 (4-74)||(13522323-13522393)
chr6 (1-79)||(22935125-22935203)
chr6 (1-79)||(23857570-23857648)
chr6 (4-74)||(33374506-33374576)
[»] scaffold2173 (2 HSPs)
scaffold2173 (141-186)||(90-135)
scaffold2173 (49-80)||(1-32)
[»] chr4 (2 HSPs)
chr4 (4-75)||(15227764-15227835)
chr4 (4-74)||(1900151-1900221)
[»] chr8 (3 HSPs)
chr8 (4-74)||(44562980-44563050)
chr8 (4-74)||(9354501-9354571)
chr8 (4-74)||(19659305-19659375)
[»] chr2 (6 HSPs)
chr2 (4-74)||(31891624-31891694)
chr2 (4-74)||(3784529-3784599)
chr2 (4-74)||(21703460-21703530)
chr2 (4-74)||(27118563-27118633)
chr2 (4-74)||(34156886-34156956)
chr2 (4-73)||(34303600-34303669)
[»] chr5 (5 HSPs)
chr5 (4-79)||(41674594-41674669)
chr5 (4-74)||(11325682-11325752)
chr5 (4-74)||(13184852-13184922)
chr5 (4-74)||(13440698-13440768)
chr5 (4-74)||(33877135-33877205)
[»] scaffold0336 (1 HSPs)
scaffold0336 (4-62)||(8108-8166)
[»] scaffold0260 (1 HSPs)
scaffold0260 (4-74)||(2965-3035)
[»] chr7 (3 HSPs)
chr7 (4-66)||(16450199-16450261)
chr7 (4-74)||(31088657-31088727)
chr7 (4-74)||(45733340-45733410)
[»] chr3 (2 HSPs)
chr3 (4-74)||(17994132-17994202)
chr3 (4-73)||(4625784-4625853)
[»] chr1 (1 HSPs)
chr1 (4-74)||(20340642-20340712)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 27630032 - 27629956
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 80  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27630032 catccattcttcccaccgttttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 27629956  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 27272909 - 27272830
Alignment:
Q  1 caacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattgt 80  Q
    |||||||| |||| ||||||||||||| || | |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27272909 caacatccattctacccgccattttactattagtatcctttgccatcaggaccacctcaagtacctgtgaatgctattgt 27272830  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 27629898 - 27629853
Alignment:
Q  141 ttttgctaggcctacttttcctccaatcccggttttgtatgctgat 186  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  27629898 ttttgctaggcctacttttcctccaatcccgatgttgtatgctgat 27629853  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 28162533 - 28162603
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  28162533 catcctttctttccaccattctatcatcagtatcctttgccatcgggacaacctcaggtacccgttaatgc 28162603  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 4525162 - 4525220
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 62  Q
    |||||||||||||| || ||||| ||||| |||||||||||| |||| | |||||||||    
T  4525162 catccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggt 4525220  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 13522393 - 13522323
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  13522393 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 13522323  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 22935203 - 22935125
Alignment:
Q  1 caacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 79  Q
    |||||||| ||||| |||||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  22935203 caacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtcaatgcaattg 22935125  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23857648 - 23857570
Alignment:
Q  1 caacatccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 79  Q
    |||||||| ||||| |||||||| || ||||| ||||| |||||| | || | ||||||||||||||| ||||| ||||    
T  23857648 caacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtcaatgcaattg 23857570  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 33374576 - 33374506
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  33374576 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 33374506  T

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Target: scaffold2173 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold2173
Description:

Target: scaffold2173; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 90 - 135
Alignment:
Q  141 ttttgctaggcctacttttcctccaatcccggttttgtatgctgat 186  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  90 ttttgctaggcctacttttcctccaatcccgatgttgtatgctgat 135  T

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Target: scaffold2173; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 1 - 32
Alignment:
Q  49 ggaccacctcaggtacccgtgaatgctattgt 80  Q
    ||||||||||||||||||||||||||||||||    
T  1 ggaccacctcaggtacccgtgaatgctattgt 32  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 15227764 - 15227835
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgct 75  Q
    ||||| ||||| || ||||| || |||||||||||||||||||| || | ||||||||||||||| ||||||    
T  15227764 catcccttctttccaccattctatcatcaatatcctttgccatcgggtcaacctcaggtacccgttaatgct 15227835  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 1900151 - 1900221
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  1900151 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 1900221  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 44562980 - 44563050
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  44562980 catcctttctttccaccattctatcatcagtatcctttgccatcgggacaacctcaggtacccgttaatgc 44563050  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 9354501 - 9354571
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  9354501 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 9354571  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 19659375 - 19659305
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  19659375 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 19659305  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 31891694 - 31891624
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  31891694 catcctttctttccaccattctatcatcagtatcctttgccatcgggacaacctcaggtacccgttaatgc 31891624  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 3784529 - 3784599
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  3784529 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 3784599  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 21703530 - 21703460
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  21703530 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 21703460  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 27118563 - 27118633
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  27118563 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 27118633  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 34156886 - 34156956
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  34156886 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 34156956  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 34303669 - 34303600
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 73  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| ||||    
T  34303669 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatg 34303600  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 41674594 - 41674669
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgctattg 79  Q
    ||||| ||||| ||||||||||||||||| || ||| ||||| | || |||||||| |||||||| ||||| ||||    
T  41674594 catcctttctttccgccattttaccatcagtaccctctgccaccgggtccacctcaagtacccgtcaatgcaattg 41674669  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 11325682 - 11325752
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||  |||| ||||||||||||||| |||||    
T  11325682 catcccttctttccaccattctatcatcagtatcctttgccattgggacaacctcaggtacccgttaatgc 11325752  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 13184922 - 13184852
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  13184922 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 13184852  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 13440768 - 13440698
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  13440768 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 13440698  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 33877135 - 33877205
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  33877135 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 33877205  T

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Target: scaffold0336 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 8108 - 8166
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggt 62  Q
    |||||||||||||| || ||||| ||||| |||||||||||| |||| | |||||||||    
T  8108 catccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggt 8166  T

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Target: scaffold0260 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 3035 - 2965
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  3035 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtcaatgc 2965  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 16450261 - 16450199
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtaccc 66  Q
    ||||| ||||| || |||||||| ||||| |||||||||||||| || | |||||||||||||    
T  16450261 catcccttctttccaccattttatcatcagtatcctttgccatcgggtcaacctcaggtaccc 16450199  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 31088727 - 31088657
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  31088727 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 31088657  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 45733340 - 45733410
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  45733340 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 45733410  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 17994202 - 17994132
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  17994202 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 17994132  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 4625784 - 4625853
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatg 73  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| ||||    
T  4625784 catcccttctttccaccattatatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatg 4625853  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 20340712 - 20340642
Alignment:
Q  4 catccgttcttcccgccattttaccatcaatatcctttgccatcaggaccacctcaggtacccgtgaatgc 74  Q
    ||||| ||||| || ||||| || ||||| |||||||||||||| || | ||||||||||||||| |||||    
T  20340712 catcccttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtcaatgc 20340642  T

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