View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_3 (Length: 519)
Name: NF6754_low_3
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Original strand, 1504948 - 1505445
Alignment:
| Q |
19 |
aaccagtcagatcaagagtttataaacgactcataactaactatatctagtcccaacacagagaat---------------ttagctactcatactcatt |
103 |
Q |
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| T |
1504948 |
aaccagtcagatcaagagtttataaacgactcataactaactatatctggtcccaacacagagaatttagctactcggaatttagctactcatactcatt |
1505047 |
T |
|
| Q |
104 |
gtagctttacaaacaggatgcaaggaagattagtttgcatcaaatgaagatgattcaatcttgaagaacccctatatcattcaagaattagttttacttc |
203 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
1505048 |
gtagctttacaaacaggatgcaagaaagattagtttgcatcaaatgaagatgattcaatcttgaagaaccccgatatcattcaagaatgagttctacttc |
1505147 |
T |
|
| Q |
204 |
ttttttaacataaaatcaatggagatgtcaaattacctaaattcttaataaaacctggatattcaatatttacggtaaattggggggaatttcctatgtt |
303 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1505148 |
ctttttaacataaaatcaaaggagatgtcaaagtacctaaattcttaataaaacctggatattctatatttacggtaaattggggggaatttcctatgtt |
1505247 |
T |
|
| Q |
304 |
ttctatccaatgcaagttaataagtcccttctaattatattgnnnnnnnnnnnnnncaaataagtttgattgttttattgactttcaataaagagagaaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
1505248 |
ttctatccaatgcaagttaataagtcccttctaattatattg----agaaaaaaaacaaataagtttgattgtttgattgactttcaataaagatagaaa |
1505343 |
T |
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| Q |
404 |
tttagacattagcataccacatttgactaatttatatttatgatccttaaagaaagacaacattctagtgttaatatcaaatgattgttactactattat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1505344 |
tttagacattagcataccacatttgactaatttatatttatgatccttaaagaaagacaacattctagtgttaatatcaaatgattgttactactattat |
1505443 |
T |
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