View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_5 (Length: 465)
Name: NF6754_low_5
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_5 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 419
Target Start/End: Complemental strand, 12220899 - 12220491
Alignment:
| Q |
12 |
gaaacacatctattgaaaaaccctaacaacaactccccgccttctcatcaccacaaacaacacctcacctcatcaccacaacttagccgaaattccgaac |
111 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12220899 |
gaaacacatctactgaaaaaccctaacaacagctccccgccttctcatcaccacaaacaacacctcacctcatcaccacaacttagccgaaactccgaac |
12220800 |
T |
|
| Q |
112 |
caattcagctttccaccaccacaacttatgctcgtctttatggctaagtcaagtacatgattaatgtcagctgaatgcaagttacatatttatgtttagt |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||| ||| || |
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| T |
12220799 |
caattcagctttccagcaccacaacttatgctcgtctttatggctaagtcaattacatgattaatgtcggctcaatgcaggttacatatttactttttgt |
12220700 |
T |
|
| Q |
212 |
ctttttaatcaaactaattacatatttattcagaaggtgttgcttatatatgatagattgaataacttggagaagtgggtgtttgagtcaatttggaaga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12220699 |
ctttttaatcaaactaattacatatttattcagaaggtgttgcatatagatgatagattgaataacttggagaagtgggtttttgagtcaatttggaaga |
12220600 |
T |
|
| Q |
312 |
gcccggctcggtcaaaagttgtggc-ttttctttgactctttttgtagactaaagttcaactcggttaaatcttgcatttggaaacgttttggatcacat |
410 |
Q |
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| |||||||||||||||||||| || ||||||| ||||||| || |||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12220599 |
gtccggctcggtcaaaagttgtagctttttcttggactcttcttctagattaaattccaactcggttaaatcttgcatttggaaacgttttggatcacat |
12220500 |
T |
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| Q |
411 |
ttcagaaag |
419 |
Q |
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||||||||| |
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| T |
12220499 |
ttcagaaag |
12220491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 340
Target Start/End: Original strand, 7424809 - 7425099
Alignment:
| Q |
49 |
cgccttctcatcaccacaaacaacacctcacctcatcaccacaacttagccgaaattccgaaccaattcagctttccaccaccacaacttatgctcgtct |
148 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||| ||||| ||| |
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| T |
7424809 |
cgccttctcatcaccacaaacaacacctcacatcatcaccacaacttagccgaaattccgaaccaaatcagcttccc-ccataacaacttttgctcatct |
7424907 |
T |
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| Q |
149 |
ttatggctaagtcaagtacatgattaatgtcagctgaatgcaagttacatatttatgtttagtctttttaatcaaactaattacatatttattcagaagg |
248 |
Q |
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||||||||||| || |||||||||||| || || |||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||| |
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| T |
7424908 |
ttatggctaagacagttacatgattaatatcgtctcaatgcaagttacatatttattttttgtcgttttaatcaaactaattacatgcttattcagaagg |
7425007 |
T |
|
| Q |
249 |
tgttgcttatatatgatagattgaataacttggagaagtgggtgtttgagtcaatttggaagagcccggctcggtcaaaagttgtggctttt |
340 |
Q |
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| T |
7425008 |
agttgcttatagatgatagattgaataacttggagaagtgggtgtttgagtcaatttggaagagcccggctcggtcaaaagttgtggctttt |
7425099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 165 - 409
Target Start/End: Complemental strand, 2443950 - 2443702
Alignment:
| Q |
165 |
tacatgattaatgtcagctgaatgcaagttacatatttatgtttagtctttttaatcaaactaattacatatttattcagaaggtgttgcttatatatga |
264 |
Q |
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||||||||||||||| ||| ||||||||||| ||| ||| | || | |||||||||||| ||| ||| |||||||| ||||||||||||||||| |||| |
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| T |
2443950 |
tacatgattaatgtcggctcaatgcaagttaggtatatatatatattttttttaatcaaattaactacgtatttatttagaaggtgttgcttatagatga |
2443851 |
T |
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| Q |
265 |
t---agattgaataacttggagaagtgggtgtttgagtcaatttggaagagcccggctcggtcaaaagttgtgg-cttttctttgactctttttgtagac |
360 |
Q |
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| || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| || ||||| |
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| T |
2443850 |
tgataggttgaataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggtcaaaagttgtggttttttcttggactcttcttctagac |
2443751 |
T |
|
| Q |
361 |
taaagttcaactcggttaaatcttgcatttggaaacgttttggatcaca |
409 |
Q |
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| | | |||| | | |||||||||||||||||||||||||||||||| |
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| T |
2443750 |
tgtattccaacgtgttcaaatcttgcatttggaaacgttttggatcaca |
2443702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 26475055 - 26474952
Alignment:
| Q |
27 |
aaaaaccctaacaacaactccccgccttctcatcaccacaaacaacacctcacctcatcaccacaacttagccgaaattccgaaccaattcagctttcca |
126 |
Q |
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|||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||| |
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| T |
26475055 |
aaaaacccaaacaacaacacctcgtcttctcatcaccacaaacaacacctcacctcatcaccccaacttagccgaaattctgaaccaattcaac-ttcca |
26474957 |
T |
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| Q |
127 |
ccacc |
131 |
Q |
| |
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||||| |
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| T |
26474956 |
ccacc |
26474952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 32057310 - 32057259
Alignment:
| Q |
51 |
ccttctcatcaccacaaacaacacctcacc---tcatcaccacaacttagcc |
99 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||| |||||| |
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| T |
32057310 |
ccttctcattaccacaaacaacacctcaccttatcatcaccacaatttagcc |
32057259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 64139 - 64234
Alignment:
| Q |
25 |
tgaaaaaccctaacaacaactccccgccttctcatcaccacaaaca-acacctcacctcatcaccacaacttagccgaaattccgaaccaattcag |
119 |
Q |
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|||||| ||| ||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
64139 |
tgaaaatcccaaacaacaacacctccccttctcatcaccacaaacagacacctcacctcatcaccacaacatagccgaatttccgaactaattcag |
64234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 69281 - 69376
Alignment:
| Q |
25 |
tgaaaaaccctaacaacaactccccgccttctcatcaccacaaaca-acacctcacctcatcaccacaacttagccgaaattccgaaccaattcag |
119 |
Q |
| |
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|||||| ||| ||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
69281 |
tgaaaatcccaaacaacaacacctccccttctcatcaccacaaacagacacctcacctcatcaccacaacatagccgaatttccgaactaattcag |
69376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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