View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_6 (Length: 414)
Name: NF6754_low_6
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 33050358 - 33049975
Alignment:
| Q |
15 |
catcaagaggacttcatctgaatcataaccttcattatgagcaacctgtgattcatcgccnnnnnnn-ccttggaactttcttggacttgcattcagata |
113 |
Q |
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| T |
33050358 |
catcaagaggacttcatctgaatcataaccctcattatgagcaacctgtgattcatcgccttttttttccttggaactttcttggacttgaattcagata |
33050259 |
T |
|
| Q |
114 |
cataatgcccccattttttaagattatatcattgaatctcattctttctcgaagctttctttatttttacttgaaccttcatcattcttggaagcattat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |||| |
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| T |
33050258 |
cataatgcccccattttttaagattatatcattgaatctccttctttctcgaagctttctttattt-------aaccttaatcattcttggaagctttat |
33050166 |
T |
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| Q |
214 |
cattccaataattctttcctttcttgtatttccttttatttgtatattgagcttgcaaagcttgatctaatgcaaaacctttggatttttctttgttcct |
313 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33050165 |
cattccaataattctttcctttcttgcatttccttttatttgtatattgagcttgcaaagcttgatctaatgcagaacctttggatttttctttgttcct |
33050066 |
T |
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| Q |
314 |
atc----------------agtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccaca |
388 |
Q |
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| T |
33050065 |
atcggttaacctcaattcatgtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccaca |
33049975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 28452125 - 28452201
Alignment:
| Q |
320 |
gcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatg |
396 |
Q |
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| T |
28452125 |
gcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaagactacaacaatatg |
28452201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 28451893 - 28451933
Alignment:
| Q |
84 |
ttggaactttcttggacttgcattcagatacataatgcccc |
124 |
Q |
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| T |
28451893 |
ttggaactttcttagacttgcattcagatgcataatgcccc |
28451933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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