View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_low_7 (Length: 403)
Name: NF6754_low_7
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 43689212 - 43689592
Alignment:
| Q |
20 |
tcactcaacattgctctttattcatcccttcaaatctaactgctctcatcactggtacgtaactcatttgatctaacatatatagtctctcataaaaatg |
119 |
Q |
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| T |
43689212 |
tcactcaacattgctctttattcatcccttcaaatctaactgctctcatcactggtatgtaactcatttgatctaacatatatagtctctcataaaaatg |
43689311 |
T |
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| Q |
120 |
ttttacttttcataaactccattattatgtatatacttttaattagcttatttaatgannnnnnnn-------gttttggaattttcaattgaaggtgct |
212 |
Q |
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| T |
43689312 |
ttttacttttcataaactccattattatgtatatacttttaattagcttatttaatgatttttttgtttttttgttttggaattttcaattgaaggtgct |
43689411 |
T |
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| Q |
213 |
acttctggtattggagctgaaacggctagggtgttggcaaaaagaggagtaagagttgtggttggtgccagagacatgaaaaaggctatgaaagtgaaag |
312 |
Q |
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| T |
43689412 |
acttctggtattggagctgaaacggctagggtgttggcaaaaagaggagtaagagttgtggttggtgccagagacatgaaaaaggctatgaaagtgaaag |
43689511 |
T |
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| Q |
313 |
aaaaaattcaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgcttctgtacaaagat |
393 |
Q |
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| T |
43689512 |
aaaaaatccaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgcttctgtacaaagat |
43689592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 204 - 393
Target Start/End: Original strand, 34747891 - 34748080
Alignment:
| Q |
204 |
gaaggtgctacttctggtattggagctgaaacggctagggtgttggcaaaaagaggagtaagagttgtggttggtgccagagacatgaaaaaggctatga |
303 |
Q |
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| T |
34747891 |
gaaggtggaacttctggtattggagctgaaacagctagagtgttagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatga |
34747990 |
T |
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| Q |
304 |
aagtgaaagaaaaaattcaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgcttctgtacaaagat |
393 |
Q |
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| T |
34747991 |
aagtgagagacaatatacaaaaagagagtccaaatgctgaggttattctgttggagattgatcttagctctttttgttctgtacaaagat |
34748080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 212 - 393
Target Start/End: Complemental strand, 7970946 - 7970767
Alignment:
| Q |
212 |
tacttctggtattggagctgaaacggctagggtgttggcaaaaagaggagtaagagttgtggttggtgccagagacatgaaaaaggctatgaaagtgaaa |
311 |
Q |
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| T |
7970946 |
tacttctggtattggagctgaaacagctagagtgttagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtg--a |
7970849 |
T |
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| Q |
312 |
gaaaaaattcaagaggagagtccttatgctgaggttattctattggagattgatcttagctctcttgcttctgtacaaagat |
393 |
Q |
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|| || || ||| | |||||||| |||||||||||||||| ||||| |||| ||||||||| || |||||||| |||||| |
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| T |
7970848 |
gacaatatacaaaaagagagtccaaatgctgaggttattctgttggaaattggtcttagctccttttcttctgtataaagat |
7970767 |
T |
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