View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6755_high_1 (Length: 635)
Name: NF6755_high_1
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6755_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 290 - 622
Target Start/End: Original strand, 43620223 - 43620559
Alignment:
| Q |
290 |
gtaacagtcacgtcacattttttatgttgtggggaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43620223 |
gtaacagtcacgtcacattttttatgttgtggagaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
43620322 |
T |
|
| Q |
390 |
gaccat---gatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
486 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43620323 |
gaccatattgatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
43620422 |
T |
|
| Q |
487 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgaggatggtgatattgaaaaagcta-ctgaac |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||| |
|
|
| T |
43620423 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatgctgatattgacaaagctatctgaac |
43620522 |
T |
|
| Q |
586 |
ttgctctattaggcatcctatttaacaaggtgatata |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43620523 |
ttgctctattaggcatcctatttaacaaggtgatata |
43620559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 70 - 297
Target Start/End: Original strand, 43619389 - 43619616
Alignment:
| Q |
70 |
aacacatcgacactattaataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttct |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43619389 |
aacacatcgacactattaataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttct |
43619488 |
T |
|
| Q |
170 |
tgtaggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcagtaag |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43619489 |
tgtaggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcggtaag |
43619588 |
T |
|
| Q |
270 |
cgagatttaaaattgtggtggtaacagt |
297 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43619589 |
tgagatttaaaattgtggtggtaacagt |
43619616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 43627035 - 43627114
Alignment:
| Q |
471 |
cgtgagataatgcaagctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataat |
550 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43627035 |
cgtgaaataatgcaagctgcagctaagagtaatttaaaacatgtttcacttgaattaggaggcaagtcacctctcataat |
43627114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 43626809 - 43626898
Alignment:
| Q |
173 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatg |
262 |
Q |
| |
|
||||||| |||||| |||||||| | |||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
43626809 |
aggctgggatcccaaatggagtgctgaatgtagtacccggatttggtccaactgctggtgctgcaatcagctcacacatggacatagatg |
43626898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 43619355 - 43619390
Alignment:
| Q |
18 |
cttatatcacctatgaagcattgacacgaacatcaa |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43619355 |
cttatatcacctatgaagcattgacacgaacatcaa |
43619390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 32407745 - 32407657
Alignment:
| Q |
173 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgat |
261 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |||||||| || ||||| || |||||| | ||||||||||||||||||||| |
|
|
| T |
32407745 |
aggctggaattccagatggagtgctcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgat |
32407657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 618
Target Start/End: Complemental strand, 32407515 - 32407384
Alignment:
| Q |
487 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgaggatggtgatattgaaaaagctactgaact |
586 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||||||||| || ||||||||| |||| ||||| |||| |||| || | |||||| ||||||| |
|
|
| T |
32407515 |
ctgcagctagaagtaatttgaaaccagtttcacttgaattaggaggaaaatcacccctcttaatttttgatgatgctgatgttaataaagctgctgaact |
32407416 |
T |
|
| Q |
587 |
tgctctattaggcatcctatttaacaaggtga |
618 |
Q |
| |
|
|||||| | ||||| ||||||| ||||||| |
|
|
| T |
32407415 |
tgctctccttggcattttatttaataaggtga |
32407384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 32434075 - 32434171
Alignment:
| Q |
172 |
taggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcagtaa |
268 |
Q |
| |
|
|||||||| || |||||||||||| |||||||| | || |||||||| | |||||||| |||||| | | |||||| ||||||||||||||||||| |
|
|
| T |
32434075 |
taggctggtattccagatggagtgctcaatgtactgccaggatttggttcaactgctggagctgcaataacctcacatatggacattgatgcagtaa |
32434171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University