View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6755_high_5 (Length: 340)

Name: NF6755_high_5
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6755_high_5
NF6755_high_5
[»] chr7 (6 HSPs)
chr7 (12-231)||(47543398-47543617)
chr7 (114-231)||(4609652-4609769)
chr7 (76-231)||(10315043-10315198)
chr7 (76-231)||(31030341-31030496)
chr7 (105-223)||(17116404-17116522)
chr7 (107-204)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (12-228)||(32160044-32160259)
chr1 (67-233)||(15259370-15259536)
chr1 (85-186)||(26260768-26260869)
chr1 (100-204)||(27568382-27568486)
chr1 (74-204)||(27363725-27363855)
chr1 (92-201)||(44675097-44675206)
chr1 (12-52)||(1951913-1951953)
chr1 (134-228)||(38133069-38133163)
chr1 (127-169)||(9484879-9484921)
chr1 (105-209)||(12688172-12688276)
chr1 (127-195)||(25392345-25392413)
chr1 (111-201)||(4889452-4889542)
chr1 (117-191)||(27264588-27264662)
chr1 (111-204)||(6723718-6723811)
chr1 (151-204)||(10686232-10686285)
chr1 (105-210)||(48973644-48973749)
chr1 (80-144)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (12-231)||(32196725-32196944)
chr6 (72-231)||(7824105-7824264)
chr6 (106-228)||(11324442-11324564)
chr6 (101-234)||(17292763-17292896)
chr6 (85-204)||(18673363-18673482)
chr6 (131-189)||(9200938-9200996)
chr6 (85-204)||(5667346-5667465)
chr6 (105-223)||(34714895-34715013)
chr6 (111-204)||(2682761-2682854)
chr6 (127-200)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (12-231)||(4740971-4741187)
chr3 (106-203)||(14788867-14788964)
chr3 (67-231)||(13043321-13043485)
chr3 (67-231)||(13051398-13051562)
chr3 (92-204)||(20017410-20017522)
chr3 (85-201)||(47160990-47161106)
chr3 (92-204)||(6894192-6894304)
chr3 (111-204)||(25845647-25845740)
chr3 (132-165)||(33388601-33388634)
chr3 (105-157)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (12-169)||(16610602-16610759)
chr5 (12-231)||(31706337-31706552)
chr5 (72-199)||(29651767-29651894)
chr5 (79-231)||(704490-704642)
chr5 (131-231)||(30722538-30722638)
chr5 (79-231)||(27482646-27482798)
chr5 (86-176)||(29994645-29994735)
chr5 (160-204)||(22922506-22922550)
chr5 (86-192)||(18967864-18967970)
chr5 (155-204)||(22924159-22924208)
chr5 (80-204)||(19314979-19315103)
chr5 (105-157)||(21041995-21042047)
chr5 (160-192)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (12-165)||(8090506-8090659)
chr2 (67-231)||(40638766-40638930)
chr2 (86-201)||(31640241-31640356)
chr2 (67-231)||(20948080-20948244)
chr2 (107-204)||(27708189-27708286)
chr2 (275-324)||(43451281-43451330)
chr2 (106-204)||(44735977-44736075)
chr2 (105-201)||(27009200-27009296)
chr2 (74-147)||(9420722-9420795)
chr2 (85-198)||(45131107-45131220)
chr2 (114-201)||(9840768-9840855)
chr2 (98-200)||(33645830-33645932)
chr2 (127-192)||(21563423-21563488)
chr2 (80-201)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (86-222)||(52577965-52578101)
chr4 (111-210)||(9831377-9831476)
chr4 (111-231)||(30972395-30972515)
chr4 (105-204)||(22653286-22653385)
chr4 (111-204)||(11131194-11131287)
chr4 (85-157)||(19846574-19846646)
chr4 (111-195)||(43001717-43001801)
chr4 (114-204)||(8830949-8831039)
chr4 (104-201)||(25130441-25130538)
chr4 (127-195)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (105-204)||(8462514-8462613)
chr8 (127-192)||(5751992-5752057)
chr8 (105-195)||(33282823-33282913)
chr8 (135-233)||(39435484-39435582)
chr8 (111-204)||(37929106-37929199)
chr8 (111-171)||(33191210-33191270)
chr8 (85-145)||(38738483-38738543)
[»] scaffold0236 (1 HSPs)
scaffold0236 (12-88)||(19937-20009)
[»] scaffold0204 (1 HSPs)
scaffold0204 (127-195)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 47543617 - 47543398
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  47543617 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacgg 47543518  T
Q  112 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 211  Q
    ||||||||| |||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47543517 actaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataacc 47543418  T
Q  212 gggcaatctttgacattaaa 231  Q
    |  |||||||||||||||||    
T  47543417 gaacaatctttgacattaaa 47543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 4609652 - 4609769
Alignment:
Q  114 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgg 213  Q
    |||||||||||  ||| ||||||| ||||||||||| | |||||| ||||||||||||| |||||||| | ||||||||||||||||||||  |||| |     
T  4609652 taagccaccacccatggtaattgaggggaagagaaatatacttcgccttcaaccacgtataagcaagcaatttaatcttatcgaccacctgattaacaga 4609751  T
Q  214 gcaatctttgacattaaa 231  Q
    ||| ||||||| ||||||    
T  4609752 gcattctttgatattaaa 4609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 10315198 - 10315043
Alignment:
Q  76 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 175  Q
    ||||||| ||||||| ||||| |||||  ||||| | ||||||||||||   || ||||||| |||||||||   | |||||  ||||||||| |||||     
T  10315198 aagaaacacttagcctatgcccaaaatagtaaacgggctaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccatgtaaag 10315099  T
Q  176 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  10315098 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 10315043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 31030341 - 31030496
Alignment:
Q  76 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 175  Q
    ||||||| ||||||| ||||| |||||  ||||| |  |||||||||||   || ||||||| |||||||||   | |||||  |||||||||||||||     
T  31030341 aagaaacacttagcctatgcccaaaatagtaaacgggttaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccacgtaaag 31030440  T
Q  176 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  31030441 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 31030496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 17116404 - 17116522
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||||||||   ||||||| |||||||||||||| || | |||| |||||||||| |||| || || |||||||||||||| ||||| ||    
T  17116404 taaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatcttatcaaccacttg 17116503  T
Q  205 gataaccgggcaatctttg 223  Q
     || |||| ||||||||||    
T  17116504 tattaccgagcaatctttg 17116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 38154001 - 38153904
Alignment:
Q  107 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||||||   ||| || || |||||||||| |  ||| |||  |||||||||| ||||||| || ||||||||| |||||||||||||    
T  38154001 aacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccacctaaaagcgagagacttaatcctatcgaccacctg 38153904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 32160259 - 32160044
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 111  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  32160259 ggacatcagagtcaagaacaatatatacaaaagttacctaagagatcataaacaaaaa-cagaaaagaaactcttagccaatgcctaaaatggtaaacgg 32160161  T
Q  112 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 211  Q
    |||||||||||||  ||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32160160 actaagccaccaccaatggtaattgaaggaaagagaaataaacttcgtcctcaaccacgtaaaagcaagcgacttaatcttatcgatcacctggataacc 32160061  T
Q  212 gggcaatctttgacatt 228  Q
    | |||||||||||||||    
T  32160060 gagcaatctttgacatt 32160044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 15259536 - 15259370
Alignment:
Q  67 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 166  Q
    |||||||||||||||||||||||| ||||| |  ||| ||||| |||||||| |||||  ||| ||||||| ||||||||||| | |||||| |||||||    
T  15259536 aaaacagaaaagaaactcttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagagaaatatacttcgccttcaac 15259437  T
Q  167 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 233  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||  || | ||||||||||||||    
T  15259436 cacgtaaaagcaagcgatttaatcttgtcgaccacctgattaaccgaacattatttgacattaaata 15259370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 26260869 - 26260768
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 184  Q
    |||||||||||| || ||| ||||  ||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||    
T  26260869 ttagccaatgcccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaagagac 26260770  T
Q  185 tt 186  Q
    ||    
T  26260769 tt 26260768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 27568486 - 27568382
Alignment:
Q  100 aatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacc 199  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| | || |||    
T  27568486 aatgacaaacagactaagccaccacccatggtaattgaagggaagagaaacaaattttgccttcaaccacgtaaaagcaagagacttaatcgtttctacc 27568387  T
Q  200 acctg 204  Q
    |||||    
T  27568386 acctg 27568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 27363725 - 27363855
Alignment:
Q  74 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaa 173  Q
    ||||||||  ||||||| ||||| |||||| ||||| ||||||||||| ||  ||| ||||||| || |||||||    |||||| ||||||||||| ||    
T  27363725 aaaagaaaaccttagcctatgcccaaaatggtaaacggactaagccacaacccatggtaattgagggaaagagaagagtacttcgccttcaaccacgaaa 27363824  T
Q  174 aagcaagcgacttaatcttatcgaccacctg 204  Q
    | |||||||||||||||||||||||||||||    
T  27363825 aggcaagcgacttaatcttatcgaccacctg 27363855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 44675206 - 44675097
Alignment:
Q  92 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 191  Q
    ||||| || ||||||||| |||||||||||||   |||||||||||||||||| ||| |||| |||| |||||||||| | || ||||| | ||||||||    
T  44675206 atgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgcaagtggcttaatct 44675107  T
Q  192 tatcgaccac 201  Q
    |||| |||||    
T  44675106 tatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 1951913 - 1951953
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcctaa 52  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1951913 ggacatcagagtcaagaacaatatatacaaaagttgcctaa 1951953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 38133069 - 38133163
Alignment:
Q  134 ttgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacatt 228  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||||||  |||||||| ||||| | |||||| ||||||| |||| ||||| ||||    
T  38133069 ttgaagggaagaaaaacaaatctcgccttcaaccacgtataagcaaaagacttaatgttatctatcacctgaataaccgagcaaactttgtcatt 38133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 9484921 - 9484879
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccac 169  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  9484921 atgataattgaagggaagagaaacaaatttcgccttcaaccac 9484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 12688276 - 12688172
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    ||||| |||||||||||||   |||||| || ||||||||||    |||||||  |||||||||| ||||||  ||| ||||||||||||| ||||||||    
T  12688276 taaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacctg 12688177  T
Q  205 gataa 209  Q
     ||||    
T  12688176 cataa 12688172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 25392345 - 25392413
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 195  Q
    ||||||||||||||||| | ||  |||||||| |||||||||| || | || |||||||||||||||||    
T  25392345 atgataattgaagggaaaataagaaaacttcgccttcaaccacatacatgcgagcgacttaatcttatc 25392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 4889542 - 4889452
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 201  Q
    ||||||| ||||||  |||||| || ||||||||||||   ||||||| ||| |||||| | || |||||||||||||| ||||| |||||    
T  4889542 gactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattttatcaaccac 4889452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 27264662 - 27264588
Alignment:
Q  117 gccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 191  Q
    ||||||||  ||| ||||||| ||||||||||    |||||| ||||||||||| ||| ||||||||||||||||    
T  27264662 gccaccacccatggtaattgaggggaagagaagagtacttcgccttcaaccacgaaaaggcaagcgacttaatct 27264588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 6723718 - 6723811
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||   |||| ||||||| ||| ||| |  |||||||  |||||||||| ||||||  || ||||||||||| |||||||||||    
T  6723718 gactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 6723811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 10686232 - 10686285
Alignment:
Q  151 aaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||| ||||||||||| ||| | ||| |||||||||||||| ||||||||    
T  10686232 aaacttcgccttcaaccacgcaaatgtaagggacttaatcttatccaccacctg 10686285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 48973749 - 48973644
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||  ||| |||||| | ||||  | | ||||||| || || ||||||||    
T  48973749 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaattttgtccaccacctg 48973650  T
Q  205 gataac 210  Q
     |||||    
T  48973649 tataac 48973644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 36098596 - 36098660
Alignment:
Q  80 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaag 144  Q
    ||||||||||| ||||| || ||| | ||| |||||||||||||   ||||||||||||||||||    
T  36098596 aactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaag 36098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 32196725 - 32196944
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  32196725 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacgg 32196824  T
Q  112 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 211  Q
    ||||||||| |||  ||| ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||    
T  32196825 actaagccatcacccatgttaattgaagggaagagaactaaacttcgtcttcaaccatgtaaaagtaagcgacttaatctggtcgaccacctggataacc 32196924  T
Q  212 gggcaatctttgacattaaa 231  Q
    |  |||||||||||||||||    
T  32196925 gaacaatctttgacattaaa 32196944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 231
Target Start/End: Original strand, 7824105 - 7824264
Alignment:
Q  72 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 171  Q
    ||||||||||| ||||||| ||||| |||||| | ||| | ||||||||||||  ||| ||||||| |||||||||   | |||||| ||||||||||||    
T  7824105 agaaaagaaacacttagcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgt 7824204  T
Q  172 aaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    ||| ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||||||    
T  7824205 aaaggcaagcgacttaatcttgtcgaccacctgattaaccgagcattctttgacattaaa 7824264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 11324564 - 11324442
Alignment:
Q  106 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctgg 205  Q
    |||| ||||||||||||||  |||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||| || |||| |||     
T  11324564 aaacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctga 11324465  T
Q  206 ataaccgggcaatctttgacatt 228  Q
    | ||||| |||| ||||| ||||    
T  11324464 agaaccgagcaaactttgtcatt 11324442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 17292763 - 17292896
Alignment:
Q  101 atgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 200  Q
    ||||||||| |||||||||| ||   |||||||||||||||||||||| |||| || |  ||||||||| | || || || ||||||||||||  |||||    
T  17292763 atgataaacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaatgacca 17292862  T
Q  201 cctggataaccgggcaatctttgacattaaatac 234  Q
    |||| |||| ||  || |||||| ||||||||||    
T  17292863 cctgcataatcgatcattctttgccattaaatac 17292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 18673482 - 18673363
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 184  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||   ||| | |||  |||||||||| |||||| ||| |||    
T  18673482 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaagactgacatatttctccttcaaccacataaaagtaagagac 18673383  T
Q  185 ttaatcttatcgaccacctg 204  Q
    ||||| ||||| ||||||||    
T  18673382 ttaattttatccaccacctg 18673363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 9200938 - 9200996
Alignment:
Q  131 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaat 189  Q
    ||||||| ||||||||||| | |||||| |||| |||||||||||||||||||||||||    
T  9200938 taattgaggggaagagaaatatacttcgccttctaccacgtaaaagcaagcgacttaat 9200996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 5667346 - 5667465
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 184  Q
    |||||| |||||||||||  ||||| |||||| ||||||   |||||||||||||| |||||  | |||| |||||||||||||  | ||||  ||  ||    
T  5667346 ttagcctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagttataaacctcgtcttcaaccatttgaaagtcagtaac 5667445  T
Q  185 ttaatcttatcgaccacctg 204  Q
    |||||| |||||||||||||    
T  5667446 ttaatcctatcgaccacctg 5667465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 34715013 - 34714895
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||||||||   ||| ||||||| ||||||||||  ||| || |  ||||||||| ||||||  || |||||||||||||| ||||| ||    
T  34715013 taaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacctaaaagtgagagacttaatcttatcaaccacgtg 34714914  T
Q  205 gataaccgggcaatctttg 223  Q
     || |||| ||| ||||||    
T  34714913 tattaccgagcattctttg 34714895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 2682854 - 2682761
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||   |||| |||||||| ||| || |  ||| |||  |||||||||| |||||||||| ||||||||||| ||||| |||||    
T  2682854 gactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacctaaaagcaagggacttaatcttgtcgacaacctg 2682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 7155495 - 7155422
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 200  Q
    ||||||||||||||| ||||||  ||| ||   ||||||||||||||||| |||  ||||||||||||| ||||    
T  7155495 atgataattgaagggtagagaagaaaatttttccttcaaccacgtaaaagtaagaaacttaatcttatcaacca 7155422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 4741187 - 4740971
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaaca 110  Q
    |||||||||||||||||||||||||||||| |||||||| ||| || |||    |||||||||||||||||||||||||| |||||||||||| |||||     
T  4741187 ggacatcagagtcaagaacaatatatacaatagttgcctgaacagagcat----aaaaaacagaaaagaaactcttagcctatgcctaaaatggtaaacg 4741092  T
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 210  Q
    |||||||||| |||  ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4741091 gactaagccatcacccatggtaattgaagggaagagaaatatacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctagataac 4740992  T
Q  211 cgggcaatctttgacattaaa 231  Q
    || ||||||||||||||||||    
T  4740991 cgagcaatctttgacattaaa 4740971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 14788964 - 14788867
Alignment:
Q  106 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacct 203  Q
    |||| ||||||||||||||| ||| |||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  14788964 aaactgactaagccaccactcatggtaattggagggaagagaaacaaatttcgccttcaaccacgtaaaagcaagggacttaatcttatctaccacct 14788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 13043485 - 13043321
Alignment:
Q  67 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 166  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13043485 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13043386  T
Q  167 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13043385 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13043321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 13051562 - 13051398
Alignment:
Q  67 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 166  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13051562 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13051463  T
Q  167 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13051462 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13051398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 20017410 - 20017522
Alignment:
Q  92 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 191  Q
    ||||| |||||| | ||| ||| |||||||||   ||| || || |||||||| |||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  20017410 atgcccaaaatggtgaacggacaaagccaccagccatggtagtttaagggaagtgaaacaaatttcttcttcaaccacgtataagcaagagacttaatct 20017509  T
Q  192 tatcgaccacctg 204  Q
    | || ||||||||    
T  20017510 tttctaccacctg 20017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 47161106 - 47160990
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 184  Q
    |||||||||||||||||  |||||| | |||||||||||   ||| |||||||| |||||||||  |||||||  |||||||||| ||||||  | | ||    
T  47161106 ttagccaatgcctaaaacaataaacggtctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaac 47161007  T
Q  185 ttaatcttatcgaccac 201  Q
    |||||| |||| |||||    
T  47161006 ttaatcctatccaccac 47160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 6894304 - 6894192
Alignment:
Q  92 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 191  Q
    |||||||||||  ||||| |||||| ||||||   ||||||||||||||||||||  | |||| ||| |||||||||  | ||||  ||  ||||||||     
T  6894304 atgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaaccatttgaaagtcagtaacttaatcc 6894205  T
Q  192 tatcgaccacctg 204  Q
    |||||||||||||    
T  6894204 tatcgaccacctg 6894192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 25845740 - 25845647
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||   ||| || || ||||| ||||||  |||||||| |||||||||| | ||||  ||||||||||| ||||| ||||||||    
T  25845740 gactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctg 25845647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 33388601 - 33388634
Alignment:
Q  132 aattgaagggaagagaaacaaacttcgtcttcaa 165  Q
    ||||||||||||||||| ||||||||||||||||    
T  33388601 aattgaagggaagagaagcaaacttcgtcttcaa 33388634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 6926049 - 6925997
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 157  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  6926049 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 6925997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 16610759 - 16610602
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  16610759 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactattagccaatgcctaaaatggtaaacgg 16610660  T
Q  112 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccac 169  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  16610659 actaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 31706337 - 31706552
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaaca 110  Q
    |||||||||||||||||||||||| ||||| |||||||| |||  | ||||||     |||||||||||||||||||||| ||||| || ||| |||||     
T  31706337 ggacatcagagtcaagaacaatatttacaatagttgcctgaacaaagcataaa-----aacagaaaagaaactcttagcctatgcccaatatggtaaacg 31706431  T
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 210  Q
    ||||||||||||||  ||| ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  31706432 gactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctttaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataac 31706531  T
Q  211 cgggcaatctttgacattaaa 231  Q
    |   |||||||||||||||||    
T  31706532 caaacaatctttgacattaaa 31706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 29651767 - 29651894
Alignment:
Q  72 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 171  Q
    ||||||||||  ||||||| ||||| || ||| ||||| ||||||||||||||  ||||||||||| | |||||||||   ||||||  ||||||||||     
T  29651767 agaaaagaaaaccttagcctatgcccaacatggtaaacggactaagccaccacccatgataattgaggagaagagaaaagtacttcgcattcaaccacga 29651866  T
Q  172 aaaagcaagcgacttaatcttatcgacc 199  Q
    |||||||||| |||||||||| ||||||    
T  29651867 aaaagcaagcaacttaatcttgtcgacc 29651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 704490 - 704642
Alignment:
Q  79 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 178  Q
    ||||| |||||||||||| |  ||| ||||| ||||||| ||||||  |||||||||||| |||||| || ||||||| | ||||||||| | ||||| |    
T  704490 aaacttttagccaatgcccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactttgccttcaaccaagcaaaagta 704589  T
Q  179 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    ||  ||||||||||||| | |||| | |||||||  |||||||| || |||||    
T  704590 agaaacttaatcttatctatcacccgaataaccgaacaatctttaacgttaaa 704642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 30722538 - 30722638
Alignment:
Q  131 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaa 230  Q
    ||||||| |||||||||   | |||||| ||||||||||||||| |||||||||||||| || || ||||||||  |||||| ||| |||||||||||||    
T  30722538 taattgaggggaagagaggaatacttcgccttcaaccacgtaaaggcaagcgacttaatattgtctaccacctgattaaccgagcattctttgacattaa 30722637  T
Q  231 a 231  Q
    |    
T  30722638 a 30722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 27482646 - 27482798
Alignment:
Q  79 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 178  Q
    |||||||||||| ||||| || ||| | ||| |||||||||||||   |||||||||||||||||| | |||  | |||  ||||||||||  ||| ||     
T  27482646 aaactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcg 27482745  T
Q  179 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    || |||||||||||||| |||||||| || |||| ||| |||||  |||||||    
T  27482746 agggacttaatcttatcaaccacctgaattaccgagcattctttatcattaaa 27482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 29994735 - 29994645
Alignment:
Q  86 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaag 176  Q
    ||||||||||||||||   ||||| || ||||||||||   ||||||||||||||||||| ||  |||||||  |||||||||| ||||||    
T  29994735 tagccaatgcctaaaacagtaaacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaag 29994645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 22922506 - 22922550
Alignment:
Q  160 cttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||    
T  22922506 cttcaaccacgtaaaagcaagagacttaatcttctctaccacctg 22922550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 18967970 - 18967864
Alignment:
Q  86 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 185  Q
    ||||||||||| |  || |||||  |||||||||| ||   ||||| ||| || ||||||||| |||| |||| |||||||||| |||||| ||| ||||    
T  18967970 tagccaatgcccagcataataaatggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaaagaaagtgact 18967871  T
Q  186 taatctt 192  Q
    |||||||    
T  18967870 taatctt 18967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 22924159 - 22924208
Alignment:
Q  155 ttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||| |||||||||||||||| |||| ||||||||||| || ||||||||    
T  22924159 ttcgccttcaaccacgtaaaaccaagagacttaatcttctctaccacctg 22924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 19314979 - 19315103
Alignment:
Q  80 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 179  Q
    |||| |||||| |||||||  ||| ||||| | |||||||||||   |||||||||  ||||||   || |||| |||| |||||||||| |||| |  |    
T  19314979 aactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtga 19315078  T
Q  180 gcgacttaatcttatcgaccacctg 204  Q
    | |||||||||||||| ||||||||    
T  19315079 gtgacttaatcttatcaaccacctg 19315103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 21042047 - 21041995
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 157  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  21042047 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 21041995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 22923149 - 22923181
Alignment:
Q  160 cttcaaccacgtaaaagcaagcgacttaatctt 192  Q
    ||||||||||||||||||||| |||||||||||    
T  22923149 cttcaaccacgtaaaagcaagagacttaatctt 22923181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 8090659 - 8090506
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 111  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  8090659 ggacatcagagttaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatggtaaacgg 8090560  T
Q  112 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaa 165  Q
    |||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  8090559 actaagccaccacccatgataattgaagggaagagaaataaactccgtcttcaa 8090506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 40638766 - 40638930
Alignment:
Q  67 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 166  Q
    |||||| |||||||||| |||||| ||| | |||||  ||||| ||||||||||||||  ||| |||||||||||||||||| || |||||  | |||||    
T  40638766 aaaacataaaagaaacttttagcctatgtccaaaatcgtaaacggactaagccaccacccatggtaattgaagggaagagaagcatacttcaacatcaac 40638865  T
Q  167 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    |||||||| | |||||| |||||||| |||||||||||  |||| | ||| ||||||||||||||    
T  40638866 cacgtaaaggtaagcgatttaatcttgtcgaccacctgattaactgagcactctttgacattaaa 40638930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 31640356 - 31640241
Alignment:
Q  86 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 185  Q
    ||||| ||||||| |||  ||||| |||||||||||||   ||| ||||||| |||||||||| |||| |||| ||||||||||||||||||||| ||||    
T  31640356 tagcctatgcctataattgtaaacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgact 31640257  T
Q  186 taatcttatcgaccac 201  Q
    |||||||||| |||||    
T  31640256 taatcttatctaccac 31640241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 20948244 - 20948080
Alignment:
Q  67 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 166  Q
    |||| ||||||||||  ||||||| |  || || ||| ||||| ||||||||||||||  ||| ||||||| | ||||||||  | |||||| |||||||    
T  20948244 aaaaaagaaaagaaaaccttagcctacacccaacatggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttcaac 20948145  T
Q  167 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 231  Q
    |||| ||| ||||||||||||||||| | |||||||||   ||||| ||| |||||| |||||||    
T  20948144 cacgaaaaggcaagcgacttaatcttgttgaccacctgagaaaccgagcagtctttggcattaaa 20948080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 27708189 - 27708286
Alignment:
Q  107 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||| ||||||||||   ||||  |||||||||||||| | |||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27708189 aacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaagcgagcgacttaatcttatcaaccacctg 27708286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 43451330 - 43451281
Alignment:
Q  275 gtgtgcatttgaattagtggaagcgtgtggtacgcacttgtaggatgatg 324  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43451330 gtgtgcatttgaattagtggaagcgtgtggtgcgcacttgtaggatgatg 43451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 44735977 - 44736075
Alignment:
Q  106 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||||| |   |||| ||||||||||||||| |  |||||||| |||||||||| ||||||  || ||||||||||| |||||||||||    
T  44735977 aaacagactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 44736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 27009296 - 27009200
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 201  Q
    ||||| |||||||||||||   ||| ||||||||||||||||||  ||| |||| |||||| ||| ||||||| || |||||||||||||| |||||    
T  27009296 taaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaagcgagagacttaatcttatcaaccac 27009200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 9420722 - 9420795
Alignment:
Q  74 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagaga 147  Q
    ||||||||  ||||||| |||||||||||  ||||| | ||||||||||||  ||||||||||| |||||||||    
T  9420722 aaaagaaaaccttagcctatgcctaaaatagtaaacgggctaagccaccacccatgataattgaggggaagaga 9420795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 45131107 - 45131220
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 184  Q
    |||||||||||| |  ||| ||||  ||||||||||||||  |||||||||||||||||||||| || | |||  |||||||||| | ||||   |||||    
T  45131107 ttagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaagtttgcgac 45131206  T
Q  185 ttaatcttatcgac 198  Q
     ||||||| |||||    
T  45131207 ataatcttgtcgac 45131220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 9840855 - 9840768
Alignment:
Q  114 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 201  Q
    ||||||||||   |||||||||||| ||||||| | |||| || | |||||| ||| ||||||| ||||| ||||||||||| |||||    
T  9840855 taagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataaaagcgagcgatttaatcttatcaaccac 9840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 33645830 - 33645932
Alignment:
Q  98 aaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcga 197  Q
    |||||| | |||||||||| ||||||   ||| |||||||| ||||||| | |||| ||   |||||||||| |||| || ||||||||||||||||| |    
T  33645830 aaaatggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaa 33645929  T
Q  198 cca 200  Q
    |||    
T  33645930 cca 33645932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 21563488 - 21563423
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 192  Q
    ||||||||| || | |||||||||||| || | | ||||||||||||||| ||| |||||||||||    
T  21563488 atgataatttaatgaaagagaaacaaattttgccctcaaccacgtaaaagaaagtgacttaatctt 21563423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 30505838 - 30505717
Alignment:
Q  80 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 179  Q
    |||| |||||| ||||| || ||| |||||||||||| ||||||   |||||||||||||||||| |||  ||| |||  ||||||| |  |||| || |    
T  30505838 aactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaatgcga 30505739  T
Q  180 gcgacttaatcttatcgaccac 201  Q
    |  ||||||||||||| |||||    
T  30505738 gaaacttaatcttatcaaccac 30505717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 52578101 - 52577965
Alignment:
Q  86 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 185  Q
    ||||| ||||||| ||||  ||||  ||||||||||||   ||||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  52578101 tagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggact 52578002  T
Q  186 taatcttatcgaccacctggataaccgggcaatcttt 222  Q
    |||||||||| | |||||| | ||||| |||| ||||    
T  52578001 taatcttatctatcacctgaagaaccgagcaaacttt 52577965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 9831476 - 9831377
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 210  Q
    |||||||||||||   |||||||||||||||||| | ||| || |||| |||||||||| |||||||||| ||||| |||||||| |||||||| |||||    
T  9831476 gactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatccaccacctgaataac 9831377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 30972395 - 30972515
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 210  Q
    |||||||||||||   |||||| |||||||||||||||  ||| |||| ||||| |||| | ||||  ||||||||||| ||||| |||||||| ||||     
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataat 30972494  T
Q  211 cgggcaatctttgacattaaa 231  Q
     | ||| |||||| |||||||    
T  30972495 tgagcactctttgccattaaa 30972515  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 22653385 - 22653286
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||||||||   |||||||||||||| ||   || |||| |||| |||||||||| |||| |  ||||| ||||||||||| ||||||||    
T  22653385 taaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaatcttatcaaccacctg 22653286  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 11131194 - 11131287
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||   ||||||||| ||||||||||  |||||||||  ||||||||||  |||||  ||| |||||||| |||| ||||||||    
T  11131194 gactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaatcctatctaccacctg 11131287  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 19846646 - 19846574
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 157  Q
    |||| ||||||| || ||| ||||| |||||| |||||||  |||||||||||||||||||||| || |||||    
T  19846646 ttagacaatgcccaacatggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttc 19846574  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 43001801 - 43001717
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 195  Q
    ||||||||||||||  ||||||||||||  |||||| |  |||||||| |||||||||| |||| |  || ||||||||||||||    
T  43001801 gactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacataaatgttagtgacttaatcttatc 43001717  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 8830949 - 8831039
Alignment:
Q  114 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||| | ||| ||||||||||||||| ||| ||| |||  ||||||| || ||||||  ||||||||||| || || ||||||||    
T  8830949 taagccaccagtcatggtaattgaagggaagataaagaaatttctccttcaactacataaaagtgagcgacttaattttgtcaaccacctg 8831039  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 25130441 - 25130538
Alignment:
Q  104 ataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 201  Q
    |||||| |||||||||||||   |||||| |||| || ||||| | |||| |||  |||||||||| | ||||| || ||||| ||||||||||||||    
T  25130441 ataaacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccac 25130538  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 48337036 - 48336968
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 195  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  48337036 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 48336968  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 8462514 - 8462613
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||| |||| |||||||||| | || |  || |||||||||||||| ||||||||    
T  8462514 taaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacctg 8462613  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 5752057 - 5751992
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 192  Q
    ||||||||||| |||||||||   | |||||| |||||||||||||||  ||||||||||||||||    
T  5752057 atgataattgaggggaagagaggaatacttcgccttcaaccacgtaaagacaagcgacttaatctt 5751992  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 33282913 - 33282823
Alignment:
Q  105 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 195  Q
    ||||| |||||||||||||   |||||||||||  || |||||| |||| ||   |||||||||| |||||| |||||||||||| |||||    
T  33282913 taaacggactaagccaccaaccatgataattgagagggagagaagcaaatttttccttcaaccacctaaaagtaagcgacttaattttatc 33282823  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 39435484 - 39435582
Alignment:
Q  135 tgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 233  Q
    |||| ||||||||| |||| |||| |||||||||| | ||  | || |||||||||||||| |||||||| | ||||| ||| |||||| |||| ||||    
T  39435484 tgaaaggaagagaagcaaatttcgccttcaaccacatgaactcgagtgacttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaata 39435582  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 37929199 - 37929106
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 204  Q
    |||||||||||||   |||||| || |||||||||| |  ||| |||  |||||||||| |||| || || ||||||||| |||||||||||||    
T  37929199 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 37929106  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 33191210 - 33191270
Alignment:
Q  111 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 171  Q
    |||||||||||||   |||||||||||||||||||| | |||| |||  ||||||||||||    
T  33191210 gactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgt 33191270  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 38738543 - 38738483
Alignment:
Q  85 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaaga 145  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||    
T  38738543 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaaga 38738483  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 19937 - 20009
Alignment:
Q  12 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttag 88  Q
    |||||||||||||||||||||||| ||||| |||||||| ||| || |||     |||||||||||||||||||||||    
T  19937 ggacatcagagtcaagaacaatatttacaatagttgcctgaacagagcat-----aaaaacagaaaagaaactcttag 20009  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 24558 - 24490
Alignment:
Q  127 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 195  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  24558 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 24490  T

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