View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6755_high_6 (Length: 318)
Name: NF6755_high_6
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6755_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 52516080 - 52516404
Alignment:
| Q |
1 |
agctgccccaattttcattctagtgcttttattcctagtactatattgtccgacagctcatccatcttaatgtttaatctccacgatactaaatttaaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52516080 |
agctgccccaattttcattctagtacttttattcctagtactatattgtccgacaactcatccatcttaatgtttaatctccacgatactaaacttaaaa |
52516179 |
T |
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| Q |
101 |
tgtaagatttgtgctattataggatcacaagttttcacgtctaagccataatctgtgagtttcttgctaagtttgaatttcatatactttgttttacacc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52516180 |
tgtaagatttgtgcaattataggatcacaagttttcacgtctaagccataatctgtgagtttcttgctaagtttgaatttcatatactttgttttacacc |
52516279 |
T |
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| Q |
201 |
taagctgcttagaaggaagttttgttttcgtgtggcttatgtccattattataatttttcatttatttcttatctaattcttcccg-------taaaact |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52516280 |
taagctgcttagaaggaagttttgttttcgtgtggcttatgtccattattataatttttcatttatttcttatctaattcttcccgtaaaagttaaaact |
52516379 |
T |
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| Q |
294 |
atactatcatctaaaaacaccaaac |
318 |
Q |
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||||||||||||||||||||||||| |
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| T |
52516380 |
atactatcatctaaaaacaccaaac |
52516404 |
T |
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