View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6755_low_10 (Length: 303)
Name: NF6755_low_10
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6755_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 42104027 - 42104322
Alignment:
| Q |
1 |
tttgtgaaatagtatgattttatggattgatctaaattattcaagttatctatcaattatacttttcaagcatgtatgtgtgtgggcatatttgggcagg |
100 |
Q |
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| T |
42104027 |
tttgtgaaatagtatgattttatgaattgatctaaattattcaagttatctatcaatcatacttttcaagcatatatgtgtgtgggcatatttgggcagg |
42104126 |
T |
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| Q |
101 |
ctcatgggtaagattaaattagatctgatatttaaaatcaaatctgcaaa-cctcattttcaaagctaaaattaataaaatcagatataaaattagcatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42104127 |
ctcatgggtaagattaaattagatctgatatttaaaatcaaatctgcaaagcctcattttcaaagctaaaattaataaaatcagatataaaattagcatt |
42104226 |
T |
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| Q |
200 |
ttataaataaagatcaaatcaattgactttattattaatttaaaaaagtaatatcaaacgaaattgattataaaaatttgtcttagacctccatat |
295 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42104227 |
ttataaataaagatcaaatcaattgactttattgttaatttaaaaaagtaatatcaaacgaaattgattataaaaatttgtcttagacctccatat |
42104322 |
T |
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