View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6755_low_4 (Length: 414)
Name: NF6755_low_4
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6755_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 3 - 414
Target Start/End: Original strand, 7717798 - 7718209
Alignment:
| Q |
3 |
atcatttatgagacccatttgcaaaacaatgagatacatatgaaccttaacctaatnnnnnnngtgttgataacgtaatgtaacgtgaattgatttcttg |
102 |
Q |
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| T |
7717798 |
atcatttatgagacccatttgcaaaacaatgagatacatatgaaccttaacctaataaaaaaagtgttgataatgtaatgtaacgtgaattggtttcttg |
7717897 |
T |
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| Q |
103 |
gggtaatgaattgtactagtttaaatttgatcatcgtagtttacaaagggaatagagagcatcttttgaaaagcggtggtcgtcccgtttgtcgaactgt |
202 |
Q |
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| T |
7717898 |
gggtaatgaattgtactagtttaaatttgatcatcgtagtttacaaagggaatagagagcatcttttgaaaagcggtggtcgtcccgtttgtcgaactgt |
7717997 |
T |
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| Q |
203 |
gttttttcatcaatctcaatacgatctgattctttactcttctccgtgaatgaatgtttttgaatctttccatcgaattatcgatattccagaggacttt |
302 |
Q |
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| T |
7717998 |
gttttttcatcaatctcaatacgatctgattctttactcttctccgtgaatgaatgtttttgaatctttccatcgaattatcgatattccagaggacttt |
7718097 |
T |
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| Q |
303 |
cttttgtttgggcttggttatgattgattatgtggtggggtatagtactnnnnnnnnnnnnngattttctctttaaaaaactctatagtttagctacact |
402 |
Q |
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| T |
7718098 |
cttttgtttgggcttggttatgattgattatgtggtggggtatagtacttctctctctctctgattttctttttaaaaaactctatagtttagctacact |
7718197 |
T |
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| Q |
403 |
tttgttattttc |
414 |
Q |
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| T |
7718198 |
tttgttattttc |
7718209 |
T |
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