View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6755_low_5 (Length: 393)
Name: NF6755_low_5
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6755_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 35200674 - 35200334
Alignment:
| Q |
3 |
atgagatggtggcatggaatggaaccttgatgtacataaccatgtggtaagcagctaagcttttaagcaaaaaagtaacaataattaaagaaagataaag |
102 |
Q |
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| T |
35200674 |
atgagatggtggcatggaatggaaccttgatgtacataaccatgtggtaagcagctaagcttttaagcaaaaaagtaacaataattaaagaaagataaag |
35200575 |
T |
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| Q |
103 |
caaaacacagaagatatgggtggataaacagattttgtagtcctccaagggattttcttctccttccctacttcccatcattattctccaccagtttaat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35200574 |
caaaacacagaagatatgggtggataaacagattttgtagtcctccaagggattttcttctccttccctacttcccatcattattctccaccagtttaat |
35200475 |
T |
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| Q |
203 |
tctctgtcatataaaccttggtattagttaactaaaatattacatctactacacttttgatttgatcagtt----aatatatatatgtaagcttgtacat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
35200474 |
tctctgtcatataaaccttggtattagttaactaaaatattacatctactacacttttgatttgatcagttgatatatatatatatgtaaggttgtacat |
35200375 |
T |
|
| Q |
299 |
tcattataaagcatgaatctatattacaaaataagataaaa |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35200374 |
tcattataaagcatgaatctatattacaaaataagataaaa |
35200334 |
T |
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