View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6755_low_9 (Length: 313)
Name: NF6755_low_9
Description: NF6755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6755_low_9 |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 5974900 - 5975189
Alignment:
| Q |
1 |
atatatgattcaaacaccgacttttatatattaatgttaatggaactaccaaccaaaatgcacttacatgacaatttaatttcaacttatttgaaggtta |
100 |
Q |
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| T |
5974900 |
atatatgattcaaataccgacttttatatatcaatgttaatgaaactatcaaccaaaatgcacttacatgacaatttaatttcaacttatttgaaggtta |
5974999 |
T |
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| Q |
101 |
catatatttatatggtccaccattgataattttgaaaactccaacaaaattcatctcttggaagtagtggttaatggccctcctcgtttttatgattgag |
200 |
Q |
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| T |
5975000 |
catatatttatatgatccaccatcgataattttgaaaactccaacaaaattcatctcttggaagt-----ctaatggccctcctcgtttttatgattgag |
5975094 |
T |
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| Q |
201 |
acaatgatgtaattgatatagattgtatttaaacaatgaaaaatagatatgtagcttgtattgtaacgatatcaatcaaaccaccgtctactatg |
295 |
Q |
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| T |
5975095 |
acaatgatgtaatttatatagattgtatttaaacaatgaaaaatagatatgtagtttgtattgtaacgacatcaaccagaccaccgtctactatg |
5975189 |
T |
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Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 11640 - 11537
Alignment:
| Q |
182 |
cctcgtttttatgattgagacaatgatgtaattgatatagattgtatttaaacaatgaaaaatagatatgtagcttgtattgtaacgatatcaatcaaac |
281 |
Q |
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| T |
11640 |
cctcatttttatgattgaaataataatttatttgatatagattggattaaaacaatggaaaataaatatatagtctgtattgaatcgacatcaatcaaat |
11541 |
T |
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| Q |
282 |
cacc |
285 |
Q |
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|||| |
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| T |
11540 |
cacc |
11537 |
T |
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