View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6758_low_1 (Length: 801)
Name: NF6758_low_1
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 197 - 799
Target Start/End: Complemental strand, 35672498 - 35671896
Alignment:
| Q |
197 |
ttgttttgtgattttgcagcaagtggaaatatcacaagaaatgcagcttgttcattttgattttaacaggtaaagcttcactttcctttgataaatctaa |
296 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35672498 |
ttgttttgtcattttgcagcaagtggaaatatcacaagaaatgcagcttgttcattttgattttaataggtaaagcttcactttcctttgataaatctaa |
35672399 |
T |
|
| Q |
297 |
gaaaatatcttcttttgtgcatttgtgttggtagtgtcatgtatatctcttgataaatctaagaaaatatattcttttgtgcatttgtgttgataaaata |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35672398 |
gaaaatatcttcttttgtgcatttgtgttggtagtgtcatgtatatctcttgataaatctaagaaaatatattcttttgtgcatttgtgttgataaaata |
35672299 |
T |
|
| Q |
397 |
tcttcttaatgtgtagtggtttgggtgtgtctgaaatgcatttgtgctaacaaattagggattgggttatgttgatgattttggagcatataattgttgt |
496 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| |||| ||||||| |
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|
| T |
35672298 |
tcttcttaatgtgtggtggtttgggtgtgtgtgaaatgcatttgtgcttacaaattaaggattgggttctgttgatgattatggagcgtatagttgttgt |
35672199 |
T |
|
| Q |
497 |
tagtgattatgatatttannnnnnnnacatgtaggcaagaaatgtttttggtgtgttcttatatcaaaagcctacaattttaatttgtttatcttctttt |
596 |
Q |
| |
|
|| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35672198 |
taatgattatgatattcattctttatacatgtaggcaagaaatgtttttggtgtgtgcttatatcaaaagcctacaatgttaatttgtttatcttctttt |
35672099 |
T |
|
| Q |
597 |
tggtgaaaactagagtattacacataatctaagatattttgtttgattttgaaggaactcattattgaaattgtaagccctatgtttgaattagtttctt |
696 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35672098 |
tggtgaaaactagagtactatacataatctaagatattttgtttgattttgaaggaactcattattgaaattgtaagccctatgtttgaattagtttctt |
35671999 |
T |
|
| Q |
697 |
aaccaaattctgcacttgaaataactttttcaattgaattttatttcttttttcttagcagatgagaaatggtagtggatatattaatggctgagatgat |
796 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35671998 |
aatcaaattctacacttgaaataactttttcaattgaattttattccttttttcttagcagatgagaaatggtagtggatatattaatggctgagatgat |
35671899 |
T |
|
| Q |
797 |
att |
799 |
Q |
| |
|
||| |
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|
| T |
35671898 |
att |
35671896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 615 - 799
Target Start/End: Complemental strand, 38456393 - 38456209
Alignment:
| Q |
615 |
tacacataatctaagatattttgtttgattttgaaggaactcattattgaaattgtaagccctatgtttgaattagtttcttaaccaaattctgcacttg |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456393 |
tacacataatctaagatattttgtttgattttgaaggaactcattattgaaattgtaagccctatgtttgaattagtttcttaaccaaattctgcacttg |
38456294 |
T |
|
| Q |
715 |
aaataactttttcaattgaattttatttcttttttcttagcagatgagaaatggtagtggatatattaatggctgagatgatatt |
799 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38456293 |
aaataactttttcaattgaatttaatttcttttttcttagcagatgagaaatggtagtggatatattaatggttgagatgatatt |
38456209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 38456492 - 38456398
Alignment:
| Q |
284 |
ttgataaatctaagaaaatatcttcttttgtgcatttgtgttggtagtgtcatgtatatctcttgataaatctaagaaaatatattcttttgtgc |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38456492 |
ttgataaatctaagaaaatatcttcttttgtgcttttgtgttggtagtgtcatgtatatctcttgataaatctaagaaaatatcttcttttgtgc |
38456398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 677 - 752
Target Start/End: Complemental strand, 13805293 - 13805218
Alignment:
| Q |
677 |
tatgtttgaattagtttcttaaccaaattctgcacttgaaataactttttcaattgaattttatttcttttttctt |
752 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||| |||| |||||||||||||||| |||| ||||||||||||| |
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|
| T |
13805293 |
tatgtttgatttagtttctaaactaaattctgcagttgagataactttttcaattgctttttttttcttttttctt |
13805218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 38456493 - 38456450
Alignment:
| Q |
345 |
cttgataaatctaagaaaatatattcttttgtgcatttgtgttg |
388 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
38456493 |
cttgataaatctaagaaaatatcttcttttgtgcttttgtgttg |
38456450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 6e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 581 - 799
Target Start/End: Complemental strand, 20131211 - 20130989
Alignment:
| Q |
581 |
ttgtttatcttctttttggtgaaaactagagtattacacata----atctaagatattttgtttgattttgaaggaactcattattgaaattgtaagccc |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
20131211 |
ttgtttatcttctttttggtgaaaactagagtactacatatagataatctaagatattttgtttgattttgaaggaactcattattgaaattgtaggccc |
20131112 |
T |
|
| Q |
677 |
tatgtttgaattagtttcttaaccaaattctgcacttgaaataactttttcaattgaattttatttcttttttcttagcagatgagaaatggtagtggat |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20131111 |
tatgtttgaattagtttcttaaccaaattctgcacttgaaataactttttcaattgaattttattccttttttcttagcagatgagaaatggtagtggag |
20131012 |
T |
|
| Q |
777 |
atattaatggctgagatgatatt |
799 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
20131011 |
atattaatggttgagatgatatt |
20130989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 581 - 799
Target Start/End: Original strand, 22201659 - 22201881
Alignment:
| Q |
581 |
ttgtttatcttctttttggtgaaaactagagtattacacata----atctaagatattttgtttgattttgaaggaactcattattgaaattgtaagccc |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22201659 |
ttgtttatcttctttttggtgaaaactagagtactacatatagataatctaagatattttgtttgattttgaaggaactcattattgaaattgtaggccc |
22201758 |
T |
|
| Q |
677 |
tatgtttgaattagtttcttaaccaaattctgcacttgaaataactttttcaattgaattttatttcttttttcttagcagatgagaaatggtagtggat |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22201759 |
tatgtttgaattagtttcttaaccaaattctgcacttgaaataactttttcaattgaattttattccttttttcttagcagatgagaaatggtagtggag |
22201858 |
T |
|
| Q |
777 |
atattaatggctgagatgatatt |
799 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
22201859 |
atattaatggttgagatgatatt |
22201881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 29873840 - 29873909
Alignment:
| Q |
217 |
aagtggaaatatcacaagaaatgcagcttgttcattttgattttaacaggtaaagcttcactttcctttg |
286 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29873840 |
aagtggaaatatcagaagacatgcagcttgttcattttgattttaataggtaaagcttcactttcctttg |
29873909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 29868729 - 29868791
Alignment:
| Q |
217 |
aagtggaaatatcacaagaaatgcagcttgttcattttgattttaacaggtaaagcttcactt |
279 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
29868729 |
aagtggaaatatcagaagacatgcagcttgttcattttgatttcaataggtaaagcttcactt |
29868791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 610
Target Start/End: Complemental strand, 19668393 - 19668340
Alignment:
| Q |
557 |
atatcaaaagcctacaattttaatttgtttatcttctttttggtgaaaactaga |
610 |
Q |
| |
|
|||||||||||||| || | || |||||| ||||||||||| |||||||||||| |
|
|
| T |
19668393 |
atatcaaaagcctaaaaatgtagtttgttaatcttcttttttgtgaaaactaga |
19668340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 44576450 - 44576495
Alignment:
| Q |
231 |
caagaaatgcagcttgttcattttgattttaacaggtaaagcttca |
276 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
44576450 |
caagacatgcagcttgttcattttgatttcaatcggtaaagcttca |
44576495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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