View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_10 (Length: 354)
Name: NF6758_low_10
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21440741 - 21440967
Alignment:
| Q |
1 |
tcacaacacaacaaattgcatgaactctcatgttgattccattaacatactcgatcacacaaacaaacnnnnnnnntcaaccggtaaagatcctatgtag |
100 |
Q |
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| T |
21440741 |
tcacaacacaacaaattgcatgaactctcatgttgattccattaacatactcaatcacaaaaacaaacaaaaaaaatcaaccggtaaagatcctatgtag |
21440840 |
T |
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| Q |
101 |
ttcctgaatgtgtccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactccttagtcacacatttaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
21440841 |
ttcctgaatgtgtccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatgtgtctctccttagtcacacatttaca |
21440940 |
T |
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| Q |
201 |
taccaaaatgactgtttattctaaata |
227 |
Q |
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| T |
21440941 |
taccaaaatgactgtttattctaaata |
21440967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 347
Target Start/End: Original strand, 21441352 - 21441480
Alignment:
| Q |
219 |
ttctaaataaaacataaaaaattcaaattttcaaatacaaattatatgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacata |
318 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21441352 |
ttctaaataaaacataaaaaattcgaattttcagatacaaattataggaataatgcacaaatttaagaaattcattctcgttcagcgtaagagacacata |
21441451 |
T |
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| Q |
319 |
cactatgaaacattgacacatacacgaac |
347 |
Q |
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| T |
21441452 |
cactatgaaacattgacacattcacgaac |
21441480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 327
Target Start/End: Original strand, 21440138 - 21440383
Alignment:
| Q |
86 |
aaagatcctatgtagttcctgaatgtgtccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactcctt |
185 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||| || |||| || ||||||||||||||| | |||||||||| |||| ||| || |
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| T |
21440138 |
aaagatcctatgtagttcctgaatgtgtccggcactactgtcactatagtattcaaattaatcaaaatta-----ataattctcaaatgtgtctctcatt |
21440232 |
T |
|
| Q |
186 |
agtcacacatttacataccaaaatgactgtttattctaaataaaacataaaaa------attcaaattttcaaatacaaattat---atgaagaatgcac |
276 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| ||| | ||||| | | |||| || | ||||| |||| | ||||||||||| |
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| T |
21440233 |
tgtcacacatttacatgccaaaatgattgtttattctaaattaaaaaaaaaaactaaagaatttaattctccattacaagttataaaaagaagaatgcac |
21440332 |
T |
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| Q |
277 |
aaatttaagaaattcattctcgttcaacgtaagagacacatacactatgaa |
327 |
Q |
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| T |
21440333 |
aactttaagaaattcattctattacagcttaagatacacatacactatgaa |
21440383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21440073 - 21440122
Alignment:
| Q |
3 |
acaacacaacaaattgcatgaactctcatgttgattccattaacatactc |
52 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
21440073 |
acaacgcaacaaattgcatgaactctaatgctgattccattaacatactc |
21440122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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