View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_11 (Length: 351)
Name: NF6758_low_11
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 43050959 - 43051286
Alignment:
| Q |
9 |
gatgtcgaagaatattcagatatatctagtatgacgaatgaccaaaaatatatatcttagcaaaaatagatttctttcaagtatgcaagagttagaaaga |
108 |
Q |
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| T |
43050959 |
gatgttgaataatattcagatatatctagtatgacgaatgaccaaaaatatacatcttagcaaaaatagatttctttcaagtatgcaagagttagaaaga |
43051058 |
T |
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| Q |
109 |
atggtgca-------catcattcttcattttaggtaacaagcaaaatacatatatttttct-ttattattgagtaatagtcatgttgatgatctataatc |
200 |
Q |
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| T |
43051059 |
atggtgaatggtgcgcatcattcttcattttaggtaacaagcaaaatacacatatttttttattattattgagtaatagtcatgttgatgatctataatc |
43051158 |
T |
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| Q |
201 |
tatttcgggagagagataagaataggaatagtaaatagagagagtagttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatg |
300 |
Q |
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| T |
43051159 |
tatttcgggagagagataagaataggaatagtaaatagagagagtagttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatg |
43051258 |
T |
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| Q |
301 |
gaggtaaagcgtgcatcatcactcaccc |
328 |
Q |
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| T |
43051259 |
gaggtaaagcgtgcatcatcactcaccc |
43051286 |
T |
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