View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_12 (Length: 339)
Name: NF6758_low_12
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 38126079 - 38126392
Alignment:
| Q |
1 |
taatcttaatctttcaagctttaggcttgtaaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaat |
100 |
Q |
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| T |
38126079 |
taatctaaatctttcaagttttaggcttgtaaatttcttgatgaaaattggaaccccaagtttatggtgattgttgcccagaagaatcatcacacaaaat |
38126178 |
T |
|
| Q |
101 |
tcttccaacctcgatctcaagacaatgtgccacctggtaaacagc---ttatgaagattgtcatagttccattgttttcaatacagtgttggtttctcgt |
197 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||| || ||||| |||||||||||||||| |||| ||| | ||||||||| || |
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| T |
38126179 |
tcttccaacctcgatctccagacaatgtgccacctggtaatcagcttgttctgaagtttgtcatagttccattatttt--atataaagttggtttcatgt |
38126276 |
T |
|
| Q |
198 |
ctagctaaccactttttggttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgat |
297 |
Q |
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| T |
38126277 |
ctagccaacctctttttggtattgcaggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcatgctggaatgat |
38126376 |
T |
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| Q |
298 |
tgtgagtatcttctac |
313 |
Q |
| |
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|||||||||||||||| |
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| T |
38126377 |
tgtgagtatcttctac |
38126392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 38118171 - 38118274
Alignment:
| Q |
210 |
tttttggttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgtgagtatctt |
309 |
Q |
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| T |
38118171 |
tttttggttttgcaggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcatgctggaatgattgtgagtatctt |
38118270 |
T |
|
| Q |
310 |
ctac |
313 |
Q |
| |
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|||| |
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| T |
38118271 |
ctac |
38118274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 38117984 - 38118091
Alignment:
| Q |
31 |
aaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattcttccaacctcgatctcaagacaatgtgc |
130 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || ||||||| |
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| T |
38117984 |
aaatttcttgatgaaaagtggaaccccaaatttctggttattgttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgc |
38118083 |
T |
|
| Q |
131 |
cacctggt |
138 |
Q |
| |
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| T |
38118084 |
ctcctggt |
38118091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 14918498 - 14918810
Alignment:
| Q |
3 |
atcttaatctttcaagctttaggcttgtaaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattc |
102 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| || | |||||||||||||||| ||||||||||||||| |
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| T |
14918498 |
atcttaatctttcaaattttaggcttgtaaatttcttgatgaagactggaaccccaagtttttgttgattgttgcccagaagagacatcacacaaaattc |
14918597 |
T |
|
| Q |
103 |
ttccaacctcgatctcaagacaatgtgccacctggtaaacagcttatg---aagattgtcatagttccattgttttcaatacagt---gttggtttctcg |
196 |
Q |
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| T |
14918598 |
ttccaacctgaaaatcgaaacaatgtgccacctggtaagcaacttgttcttatgtttttcatagttccattattttatatataataatgttggtttca-- |
14918695 |
T |
|
| Q |
197 |
tctagctaaccactttttggttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatga |
296 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |
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| T |
14918696 |
--tagctaacctctttttggttttgcaggaactgttgtggacaacaaaatttgtcatcctaggaattatgatttctatatgtgttctcatgcaggaagaa |
14918793 |
T |
|
| Q |
297 |
ttgtgagtatcttctac |
313 |
Q |
| |
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||||||||||||||||| |
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| T |
14918794 |
ttgtgagtatcttctac |
14918810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 35469008 - 35469099
Alignment:
| Q |
217 |
ttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgtgagtatct |
308 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||| || || |||||||||||| | ||||||||||| || ||||| |||||||||| |
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| T |
35469008 |
ttttgcaggaactgttatcgacaataaaatttgtcatccaagaaactatgatttctacctctgtgctcatgctgggatgatagtgagtatct |
35469099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 37590882 - 37590833
Alignment:
| Q |
251 |
catcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgt |
300 |
Q |
| |
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| T |
37590882 |
catccaagaaattacgatttctacatgtgtgctcatgctggaatgattgt |
37590833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 35468815 - 35468901
Alignment:
| Q |
21 |
ttaggcttgtaaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattcttcca |
107 |
Q |
| |
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| T |
35468815 |
ttaggcatgcaagtttcttgatgaaaattggactccaaaatttgtggtaattgttgctcaaaagaaccaccacacaagattcttcca |
35468901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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