View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6758_low_16 (Length: 278)
Name: NF6758_low_16
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_16 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
| [»] scaffold1126 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0927 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 375 - 639
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
375 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattatggtcgcaaatcagttttcatcat |
474 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
475 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
574 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgttgatgt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
575 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgtttatgt |
639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 28584553 - 28584289
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28584553 |
atttccagtgaagacgtgcaaggacatgttgctcacatgatttcaaatgaatggaaatttctcaatcaagaaattctggttgcaaatcagttttcatcat |
28584454 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
28584453 |
cattttccaacttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaaaccaagcctctctaatctccaggaacatgtcaagtc |
28584354 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgttgatgt |
265 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
28584353 |
attgattaatgttagtgttgggtgtaattagtacattttcaaatattgtaatctgttgtttatgt |
28584289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 26314470 - 26314218
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
26314470 |
atttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattctggttgcaaatcaattttcatcat |
26314371 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
26314370 |
cattttccaatttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtc |
26314271 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatc |
253 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
26314270 |
attgattaatgctagtggtgggtgcaattagtacattttcaaatattgtgatc |
26314218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 28573323 - 28573059
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
28573323 |
atttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaatcagttttcatcgt |
28573224 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
28573223 |
cattttccaacttttgtctcaatgctgcaagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagtc |
28573124 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgttgatgt |
265 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||||||| |||| |
|
|
| T |
28573123 |
attgattaatgttagtgttgggtgtaattagtacattttcagatattgtgttctgttgtttatgt |
28573059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 28566578 - 28566327
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28566578 |
atttccagtgaagacgtgcaacgacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaatcagttttcatcat |
28566479 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |
|
|
| T |
28566478 |
cattttccaatttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccgagcctctctaatctccaggaacatgttaactc |
28566379 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || |||| ||||||| |
|
|
| T |
28566378 |
attgattaatgttagtgttgggtgcaattagtacatctttaaattttgtgat |
28566327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 20615236 - 20615035
Alignment:
| Q |
8 |
gtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcatcattttc |
107 |
Q |
| |
|
||||||| ||||||| |||||||||| | ||||||| |||||||||||||||||| |||||||||||| || | || || ||| ||||||||||| | |
|
|
| T |
20615236 |
gtgaagatgtgcaaagacatgttgctgagatgattttaaatgaatggaaatgtctaaatcaagaaattttgaacccatatgtatttccatcatcatttac |
20615137 |
T |
|
| Q |
108 |
caatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgatt |
207 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
20615136 |
caatttttgccttaatgctgctagaatggttcctctcatgtaccattataagagcaacccaagcctctctagtctaaaggaacatgtcaagtcattgatt |
20615037 |
T |
|
| Q |
208 |
aa |
209 |
Q |
| |
|
|| |
|
|
| T |
20615036 |
aa |
20615035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 24070015 - 24069751
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
|||||| | ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
24070015 |
atttccggcgaagaggtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaataagttttcatcat |
24069916 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
24069915 |
cattttccaatttttgtctcaatgctgcaagaatggttctcctcatgtaccactataagagcaactcaagcctctctaatctccaggaacatgtcaagtc |
24069816 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgttgatgt |
265 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||| ||| |||||||||||||||||| |||| |
|
|
| T |
24069815 |
attgattaatgttggtgttggatgcaattagtacatactcatatattgtgatctgttgtttatgt |
24069751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 24080721 - 24080985
Alignment:
| Q |
1 |
atttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcat |
100 |
Q |
| |
|
|||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
24080721 |
atttccggggaagacgtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaataagttttcatcat |
24080820 |
T |
|
| Q |
101 |
cattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtc |
200 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||||| |
|
|
| T |
24080821 |
cattttccaatttttgtatcaatgctgcaagaatggttcccctcatgtaccactataagagcaaccctagcctatctaatctctaggaacatgtcaagtt |
24080920 |
T |
|
| Q |
201 |
attgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgttgatgt |
265 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||||||||| |||| |
|
|
| T |
24080921 |
attgattaatgttggtgttggatgcaattagtacagtttcaaatattgtaatctgttgtttatgt |
24080985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 2718 - 2586
Alignment:
| Q |
121 |
aatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgttagtgttg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
2718 |
aatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgctagtggtg |
2619 |
T |
|
| Q |
221 |
ggtgcaattaatacattttcaaatattgtgatc |
253 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
2618 |
ggtgcaattagtacattttcaaatattgtgatc |
2586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 1 - 107
Alignment:
| Q |
115 |
tgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgtta |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttg |
100 |
T |
|
| Q |
215 |
gtgttgg |
221 |
Q |
| |
|
||||||| |
|
|
| T |
101 |
gtgttgg |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 1 - 107
Alignment:
| Q |
115 |
tgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgtta |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttg |
100 |
T |
|
| Q |
215 |
gtgttgg |
221 |
Q |
| |
|
||||||| |
|
|
| T |
101 |
gtgttgg |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 4 - 95
Alignment:
| Q |
169 |
agcctctctaatctccatgaacatgtcaagtcattgattaatgttagtgttgggtgcaattaatacattttcaaatattgtgatctgttgtt |
260 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||| |||||| | ||||||| |
|
|
| T |
4 |
agcctctctaatctccaggaacatgtcaagtcattgattaacgttggtgttggacgcaattagtacattttcaaacattgtgttatgttgtt |
95 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 2603159 - 2603357
Alignment:
| Q |
19 |
caaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatc---agttttcatcatcattttccaattttt |
115 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| | | | |||| ||||| ||||||||| |||| |||| |
|
|
| T |
2603159 |
caaagacatgttgctaacatgatttcaaatgaatggaaacgtctcaatcaagaaatcataaccccgaatccaattttttcgtcatcatttaccaaatttt |
2603258 |
T |
|
| Q |
116 |
gtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgtta |
214 |
Q |
| |
|
| || |||| ||| ||||||||||| |||||||| ||||| |||| ||||| || || || ||||| || || | ||||||||||||| ||||||||| |
|
|
| T |
2603259 |
gccttaatgttgcaagaatggttcctctcatgtatcactaccagagtaatccaagtctttccaatctacaagaccttgtcaagtcattggttaatgtta |
2603357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 2600015 - 2600064
Alignment:
| Q |
25 |
catgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaat |
74 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2600015 |
catgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
2600064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 2591881 - 2591928
Alignment:
| Q |
25 |
catgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaa |
72 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
2591881 |
catgttgctcatatgatttcaaatgaatggaaacgtctgaatcaagaa |
2591928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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