View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6758_low_18 (Length: 266)

Name: NF6758_low_18
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6758_low_18
NF6758_low_18
[»] chr4 (21 HSPs)
chr4 (170-251)||(54005884-54005965)
chr4 (1-41)||(4758889-4758929)
chr4 (37-81)||(54005841-54005885)
chr4 (1-39)||(36099485-36099523)
chr4 (1-39)||(53621440-53621478)
chr4 (1-38)||(18135425-18135462)
chr4 (1-38)||(49122632-49122669)
chr4 (4-40)||(580526-580562)
chr4 (39-95)||(39478200-39478256)
chr4 (1-39)||(23125644-23125682)
chr4 (1-42)||(5970391-5970432)
chr4 (1-42)||(38688023-38688064)
chr4 (9-40)||(20688536-20688567)
chr4 (4-42)||(2385310-2385348)
chr4 (4-38)||(3085987-3086021)
chr4 (1-39)||(47948937-47948975)
chr4 (1-38)||(27006504-27006541)
chr4 (1-38)||(44200084-44200121)
chr4 (1-41)||(2279520-2279560)
chr4 (1-29)||(18430367-18430395)
chr4 (4-40)||(51833009-51833045)
[»] chr2 (16 HSPs)
chr2 (37-96)||(19005077-19005136)
chr2 (1-40)||(6761462-6761501)
chr2 (1-38)||(16241379-16241416)
chr2 (1-38)||(25892056-25892093)
chr2 (1-38)||(44737394-44737431)
chr2 (1-41)||(11711436-11711476)
chr2 (1-41)||(18452565-18452605)
chr2 (37-89)||(24772991-24773043)
chr2 (1-39)||(29866080-29866118)
chr2 (1-39)||(39377834-39377872)
chr2 (1-38)||(20427000-20427037)
chr2 (1-38)||(41260024-41260061)
chr2 (1-39)||(13775709-13775747)
chr2 (1-31)||(39377943-39377973)
chr2 (1-41)||(30864787-30864827)
chr2 (1-41)||(42263582-42263622)
[»] chr6 (12 HSPs)
chr6 (37-94)||(15909409-15909466)
chr6 (1-41)||(22880914-22880954)
chr6 (1-41)||(22898849-22898889)
chr6 (1-40)||(6045793-6045832)
chr6 (3-38)||(31971144-31971179)
chr6 (1-39)||(24949743-24949781)
chr6 (1-38)||(390917-390954)
chr6 (1-40)||(885714-885753)
chr6 (1-40)||(7405441-7405480)
chr6 (1-38)||(14931257-14931294)
chr6 (1-38)||(17225355-17225392)
chr6 (11-43)||(33859612-33859644)
[»] chr1 (15 HSPs)
chr1 (1-41)||(38830479-38830519)
chr1 (1-40)||(2352306-2352345)
chr1 (1-44)||(9302031-9302074)
chr1 (1-40)||(14281587-14281626)
chr1 (1-40)||(23398077-23398116)
chr1 (1-38)||(29312438-29312475)
chr1 (4-40)||(34718888-34718924)
chr1 (1-40)||(2961216-2961255)
chr1 (1-40)||(9548669-9548708)
chr1 (1-40)||(10380502-10380541)
chr1 (1-38)||(24595030-24595067)
chr1 (6-39)||(39720783-39720816)
chr1 (1-33)||(2512415-2512447)
chr1 (1-41)||(28359183-28359223)
chr1 (1-33)||(45536275-45536307)
[»] chr3 (19 HSPs)
chr3 (1-40)||(8243794-8243833)
chr3 (1-40)||(10049665-10049704)
chr3 (1-38)||(9440240-9440277)
chr3 (1-38)||(26999020-26999057)
chr3 (1-37)||(6087013-6087049)
chr3 (1-39)||(14768096-14768134)
chr3 (1-39)||(25846623-25846661)
chr3 (1-39)||(28945654-28945692)
chr3 (1-38)||(9465183-9465220)
chr3 (1-33)||(25113461-25113493)
chr3 (1-33)||(49122948-49122980)
chr3 (3-38)||(29019734-29019769)
chr3 (1-40)||(42605939-42605978)
chr3 (1-39)||(10049780-10049818)
chr3 (1-38)||(47449915-47449952)
chr3 (1-42)||(52114136-52114177)
chr3 (6-38)||(379069-379101)
chr3 (4-40)||(28565050-28565086)
chr3 (1-33)||(42841881-42841913)
[»] chr5 (17 HSPs)
chr5 (1-39)||(25027692-25027730)
chr5 (1-38)||(13144879-13144916)
chr5 (1-40)||(1643341-1643380)
chr5 (1-39)||(15569443-15569481)
chr5 (1-39)||(37699892-37699930)
chr5 (1-39)||(41989562-41989600)
chr5 (1-38)||(7053647-7053684)
chr5 (1-38)||(9601705-9601742)
chr5 (1-38)||(29374169-29374206)
chr5 (1-40)||(7945834-7945873)
chr5 (1-31)||(1108289-1108319)
chr5 (4-38)||(7749917-7749951)
chr5 (9-42)||(29374290-29374323)
chr5 (1-38)||(31803070-31803107)
chr5 (9-41)||(25027814-25027846)
chr5 (1-41)||(36419097-36419137)
chr5 (1-33)||(41046832-41046864)
[»] scaffold0690 (1 HSPs)
scaffold0690 (37-94)||(2639-2696)
[»] chr8 (15 HSPs)
chr8 (1-38)||(2229182-2229219)
chr8 (1-39)||(2339288-2339326)
chr8 (1-38)||(11293299-11293336)
chr8 (1-38)||(29563657-29563694)
chr8 (1-38)||(45145868-45145905)
chr8 (1-33)||(12270168-12270200)
chr8 (1-40)||(25847964-25848003)
chr8 (1-39)||(30924033-30924071)
chr8 (1-31)||(37564743-37564773)
chr8 (9-42)||(2229065-2229098)
chr8 (9-38)||(25848087-25848116)
chr8 (1-38)||(33642457-33642494)
chr8 (1-38)||(33837579-33837616)
chr8 (1-33)||(22781886-22781918)
chr8 (1-33)||(32159146-32159178)
[»] chr7 (10 HSPs)
chr7 (1-38)||(23248780-23248817)
chr7 (1-39)||(5909583-5909621)
chr7 (1-38)||(5347834-5347871)
chr7 (1-38)||(35427771-35427808)
chr7 (52-96)||(8562631-8562675)
chr7 (1-40)||(12763226-12763265)
chr7 (11-41)||(7107752-7107782)
chr7 (4-42)||(10599431-10599469)
chr7 (1-38)||(7463448-7463485)
chr7 (1-38)||(15074621-15074658)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-40)||(35951-35990)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-40)||(11027-11066)
[»] scaffold0144 (1 HSPs)
scaffold0144 (1-40)||(38822-38861)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-38)||(29243-29280)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-41)||(492417-492457)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 54005884 - 54005965
Alignment:
Q  170 tatatttacatatattgaggcacgttttatcgataatctgagctttttcaagtcaccctgtatatcattattcgttgttaat 251  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  54005884 tatattgacatatattgaggcacgttttattgataatatgagcttttttaagtcaccttgtatatcattattcgttgttaat 54005965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4758889 - 4758929
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4758889 aagtaaattgtctcttgtaaataggaccggaggtagtattt 4758929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 54005841 - 54005885
Alignment:
Q  37 tattttgcttttgggtgggtgggtcgtggcccaccttggctcata 81  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  54005841 tattttgcttttgggtgggtgggtcgtggcccaccttggcccata 54005885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36099523 - 36099485
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36099523 aagtaaattgtctcttgtaaataggaccggaggtagtat 36099485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 53621440 - 53621478
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53621440 aagtaaattgtctcttgtaaataggaccggaggtagtat 53621478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18135425 - 18135462
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18135425 aagtaaattgtctcttgtaaataggaccggaggtagta 18135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49122632 - 49122669
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49122632 aagtaaattgtctcttgtaaataggaccggaggtagta 49122669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 580526 - 580562
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  580526 taaattgtctcttgtaaataggaccggaggtagtatt 580562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 39478200 - 39478256
Alignment:
Q  39 ttttgcttttgggtgggtgggtcgtggcccaccttggctcatacaaagctctgccac 95  Q
    ||||||||||||||||||||   |||||||||||| || ||||||||||||||||||    
T  39478200 ttttgcttttgggtgggtggtctgtggcccaccttagcccatacaaagctctgccac 39478256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23125682 - 23125644
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  23125682 aagtaaattgtctcttgtaaataggaccggagggagtat 23125644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5970391 - 5970432
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatttt 42  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  5970391 aagtaaattgtctcttgtaaataggaccggaaggagtatttt 5970432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38688023 - 38688064
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatttt 42  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  38688023 aagtaaattgtttcttgtaaataggaccggagggagtatttt 38688064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 20688536 - 20688567
Alignment:
Q  9 tgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||    
T  20688536 tgtctcttgtaaataggaccggaggtagtatt 20688567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 2385310 - 2385348
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagtatttt 42  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  2385310 taaattgtctcttgtaaataggaccagagggagtatttt 2385348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 3085987 - 3086021
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||||||| ||||    
T  3085987 taaattgtctcttgtaaataggaccggagggagta 3086021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47948975 - 47948937
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  47948975 aagtaaattgtctcttgtaagtaggactggaggtagtat 47948937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27006541 - 27006504
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  27006541 aagtaaattgtctcttgtaaataggactggagggagta 27006504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44200084 - 44200121
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  44200084 aagtaaattgtctcttgtaaataagaccggagggagta 44200121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2279560 - 2279520
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    |||||||||||||||||||||||||||| || | |||||||    
T  2279560 aagtaaattgtctcttgtaaataggaccagaaggagtattt 2279520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18430367 - 18430395
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccg 29  Q
    |||||||||||||||||||||||||||||    
T  18430367 aagtaaattgtctcttgtaaataggaccg 18430395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 51833045 - 51833009
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||||| | ||||||    
T  51833045 taaattgtctcttgtaaataggaccggatggagtatt 51833009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 19005136 - 19005077
Alignment:
Q  37 tattttgcttttgggtgggtgggtcgtggcccaccttggctcatacaaagctctgccact 96  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||| ||||||    
T  19005136 tattttgcttttgggtgggtgggctgtggcccaccttggcccatacaaagctccgccact 19005077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6761501 - 6761462
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6761501 aagtaaattgtctcttgtaaataggaccggaggtagtatt 6761462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16241379 - 16241416
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16241379 aagtaaattgtctcttgtaaataggaccggaggtagta 16241416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25892056 - 25892093
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25892056 aagtaaattgtctcttgtaaataggaccggaggtagta 25892093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44737394 - 44737431
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44737394 aagtaaattgtctcttgtaaataggaccggaggtagta 44737431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11711436 - 11711476
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  11711436 aagtaaattgtctcttgtaaataggaccggagggagtattt 11711476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18452605 - 18452565
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  18452605 aagtaaattgtctcttgtaaataggactggaggtagtattt 18452565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 24773043 - 24772991
Alignment:
Q  37 tattttgcttttgggtgggtgggtcgtggcccaccttggctcatacaaagctc 89  Q
    |||||||||||||| |||||||||||||| ||||||| || ||||||||||||    
T  24773043 tattttgcttttggatgggtgggtcgtggtccaccttagcccatacaaagctc 24772991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29866118 - 29866080
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  29866118 aagtaaattgtctcttgtaaataggaccggagggagtat 29866080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39377872 - 39377834
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  39377872 aagtaaattgtctcttgtaaataggaccggagggagtat 39377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20427037 - 20427000
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  20427037 aagtaaattgtctcttgtaaataggaccggagggagta 20427000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41260061 - 41260024
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  41260061 aagtaaattgtctcttgtaaataggaccggagggagta 41260024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13775747 - 13775709
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  13775747 aagtaaattatctcttgtaaataggaccggagggagtat 13775709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 39377943 - 39377973
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccgga 31  Q
    |||||||||||||||||||||||||||||||    
T  39377943 aagtaaattgtctcttgtaaataggaccgga 39377973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30864787 - 30864827
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||||||||||||||| ||| ||||| |||||||    
T  30864787 aagtaaattgtctcttgtaaataagactggagggagtattt 30864827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42263582 - 42263622
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||| ||||||||||||||| ||||| |||||||    
T  42263582 aagtaaattgtttcttgtaaataggactggagggagtattt 42263622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 15909409 - 15909466
Alignment:
Q  37 tattttgcttttgggtgggtgggtcgtggcccaccttggctcatacaaagctctgcca 94  Q
    ||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||    
T  15909409 tattttgcttttgggtgggtgggccgtggtccaccttagcccatacaaagctctgcca 15909466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22880954 - 22880914
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22880954 aagtaaattgtctcttgtaaataggaccggaggtagtattt 22880914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22898889 - 22898849
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22898889 aagtaaattgtctcttgtaaataggaccggaggtagtattt 22898849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6045793 - 6045832
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  6045793 aagtaaattgtctcttgtaaataggaccggagggagtatt 6045832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 31971144 - 31971179
Alignment:
Q  3 gtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  31971144 gtaaattgtctcttgtaaataggaccggaggtagta 31971179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24949743 - 24949781
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24949743 aagtaaattgtctcttgtaaataggaccggagggagtat 24949781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 390917 - 390954
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  390917 aagtaaattgtctcttgtaaataggaccggagggagta 390954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 885714 - 885753
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  885714 aagtaaattctctcttgtaaataggatcggaggtagtatt 885753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7405480 - 7405441
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  7405480 aagtaaattgtctcttgtaaataggaccgaagggagtatt 7405441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14931294 - 14931257
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  14931294 aagtaaattgtctcttataaataggaccggaagtagta 14931257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17225355 - 17225392
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  17225355 aagtaaattgtctcttgtaaataggatcggagggagta 17225392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 33859612 - 33859644
Alignment:
Q  11 tctcttgtaaataggaccggaggtagtattttg 43  Q
    ||||||||||||||||||||||| |||||||||    
T  33859612 tctcttgtaaataggaccggagggagtattttg 33859644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38830519 - 38830479
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38830519 aagtaaattgtctcttgtaaataggaccggaggtagtattt 38830479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2352345 - 2352306
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2352345 aagtaaattgtctcttgtaaataggaccggaggtagtatt 2352306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9302031 - 9302074
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattttgc 44  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  9302031 aagtaaattgtctcttataaataggaccggaggtagtattttgc 9302074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14281626 - 14281587
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14281626 aagtaaattgtctcttgtaaataggaccggaggtagtatt 14281587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23398116 - 23398077
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  23398116 aagtaagttgtctcttgtaaataggaccggaggtagtatt 23398077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29312475 - 29312438
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29312475 aagtaaattgtctcttgtaaataggaccggaggaagta 29312438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 34718924 - 34718888
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||||||| ||||||    
T  34718924 taaattgtctcttgtaaataggaccggagggagtatt 34718888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2961216 - 2961255
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  2961216 aagtaaattgtctcttgtaaataggaccagagggagtatt 2961255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9548708 - 9548669
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  9548708 aagtaaattgtttcttgtaaataggaccggaggaagtatt 9548669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10380502 - 10380541
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  10380502 aagtaaattgtctcttgtaaataggaccagagggagtatt 10380541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24595030 - 24595067
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||| | |||||||||    
T  24595030 aagtaaattgtctcttgtaaataggatcagaggtagta 24595067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 39720783 - 39720816
Alignment:
Q  6 aattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||| ||||||||||||||||||||||    
T  39720783 aattgtctcttataaataggaccggaggtagtat 39720816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2512447 - 2512415
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  2512447 aagtaaattgtctcttgtaaataggatcggagg 2512415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28359183 - 28359223
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  28359183 aagtaaattgtttcttgtaaataggaccggatgaagtattt 28359223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45536275 - 45536307
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    ||||||||| |||||||||||||||||||||||    
T  45536275 aagtaaattatctcttgtaaataggaccggagg 45536307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8243794 - 8243833
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8243794 aagtaaattgtctcttgtaaataggaccggaggtagtatt 8243833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10049704 - 10049665
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10049704 aagtaaattgtctcttgtaaataggaccggaggtagtatt 10049665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9440240 - 9440277
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9440240 aagtaaattgtctcttgtaaataggaccggaggtagta 9440277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26999057 - 26999020
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26999057 aagtaaattgtctcttgtaaataggaccggaggtagta 26999020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6087013 - 6087049
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  6087013 aagtaaattgtctcttgtaaataggaccggaggtagt 6087049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14768134 - 14768096
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  14768134 aagtaaattgtctcttgtaaataggaccggagggagtat 14768096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25846623 - 25846661
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  25846623 aagtaaattgtctcttgtaaataggaccggaagtagtat 25846661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28945692 - 28945654
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  28945692 aagtaaattgtctcttgtaaataggaccggagggagtat 28945654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9465183 - 9465220
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9465183 aagtaaattgtctcttgtaaataggaccggagggagta 9465220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25113461 - 25113493
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    |||||||||||||||||||||||||||||||||    
T  25113461 aagtaaattgtctcttgtaaataggaccggagg 25113493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49122980 - 49122948
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    |||||||||||||||||||||||||||||||||    
T  49122980 aagtaaattgtctcttgtaaataggaccggagg 49122948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 29019769 - 29019734
Alignment:
Q  3 gtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29019769 gtaaattgtctcttgtaaataggaccggagggagta 29019734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42605939 - 42605978
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  42605939 aagtaaattgtctcttgtaagtaggaccggagggagtatt 42605978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10049780 - 10049818
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  10049780 aagtcaattgtctcttgtaaataggaccggagggagtat 10049818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47449952 - 47449915
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  47449952 aagtaaattgtctcttgtaaataggatcggagggagta 47449915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52114136 - 52114177
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatttt 42  Q
    |||||||||||||||||||||||||||  |||||| ||||||    
T  52114136 aagtaaattgtctcttgtaaataggactagaggtaatatttt 52114177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 379101 - 379069
Alignment:
Q  6 aattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||||| ||||    
T  379101 aattgtctcttgtaaataggaccggagggagta 379069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 28565050 - 28565086
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  28565050 taaattgtctcttgtaaataggaccgaagggagtatt 28565086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42841881 - 42841913
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    ||||||||||||||||||||||||| |||||||    
T  42841881 aagtaaattgtctcttgtaaatagggccggagg 42841913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25027730 - 25027692
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25027730 aagtaaattgtctcttgtaaataggaccggaggtagtat 25027692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13144916 - 13144879
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13144916 aagtaaattgtctcttgtaaataggaccggaggtagta 13144879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1643380 - 1643341
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1643380 aagtaaattgtctattgtaaataggaccggaggtagtatt 1643341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15569443 - 15569481
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  15569443 aagtaaattgtctcttgtaaataggaccggaggaagtat 15569481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37699892 - 37699930
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  37699892 aagtaaattgtctcttgtaaataggaccggatgtagtat 37699930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41989600 - 41989562
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41989600 aagtaaattgtctcttgtaaataggaccggaggaagtat 41989562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7053684 - 7053647
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  7053684 aagtaaattgtctcttgtaaataggaccggagggagta 7053647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9601705 - 9601742
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  9601705 aagtaaattgtctcttgtaaataggaccggagggagta 9601742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29374206 - 29374169
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  29374206 aagtaaattgtctcttgtaaataggatcggaggtagta 29374169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7945873 - 7945834
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  7945873 aagtaaattgtttcttgtaaataggaccggagggagtatt 7945834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1108319 - 1108289
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccgga 31  Q
    |||||||||||||||||||||||||||||||    
T  1108319 aagtaaattgtctcttgtaaataggaccgga 1108289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 7749951 - 7749917
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||||||||| ||||    
T  7749951 taaattgtctcttgtaaataggaccggagggagta 7749917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 29374290 - 29374323
Alignment:
Q  9 tgtctcttgtaaataggaccggaggtagtatttt 42  Q
    ||||||||||||||||||||||||| ||||||||    
T  29374290 tgtctcttgtaaataggaccggagggagtatttt 29374323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31803070 - 31803107
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  31803070 aagtaaattgtttcttgtaaataggaccggagggagta 31803107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 25027814 - 25027846
Alignment:
Q  9 tgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||||||||||||||||| |||||||    
T  25027814 tgtctcttgtaaataggaccggagggagtattt 25027846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36419097 - 36419137
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||||||||||||||||| ||| ||| |||||||    
T  36419097 aagtaaattgtctcttgtaaataggtccgaagggagtattt 36419137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41046864 - 41046832
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    ||||| |||||||||||||||||||||||||||    
T  41046864 aagtagattgtctcttgtaaataggaccggagg 41046832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 2696 - 2639
Alignment:
Q  37 tattttgcttttgggtgggtgggtcgtggcccaccttggctcatacaaagctctgcca 94  Q
    ||||||||||||||||||||||| ||||| ||||||| || |||||||||||| ||||    
T  2696 tattttgcttttgggtgggtgggccgtggtccaccttagcccatacaaagctccgcca 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2229182 - 2229219
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2229182 aagtaaattgtctcttgtaaataggaccggaggtagta 2229219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2339326 - 2339288
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2339326 aagtaaattgtctcttgtaaataggaccggagggagtat 2339288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11293299 - 11293336
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  11293299 aagtaaattgtctcttgtaaataggaccggaggaagta 11293336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29563694 - 29563657
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29563694 aagtaaattgtctcttgtaaataggaccggagggagta 29563657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45145905 - 45145868
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  45145905 aagtaaattgtctcttgtaaataggaccggagggagta 45145868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12270168 - 12270200
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    |||||||||||||||||||||||||||||||||    
T  12270168 aagtaaattgtctcttgtaaataggaccggagg 12270200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25848003 - 25847964
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  25848003 aagtaaattgtctcttgtaaataggatcggagctagtatt 25847964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30924033 - 30924071
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  30924033 aagtaaattgtcttttataaataggaccggaggtagtat 30924071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 37564743 - 37564773
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccgga 31  Q
    |||||||||||||||||||||||||||||||    
T  37564743 aagtaaattgtctcttgtaaataggaccgga 37564773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 2229098 - 2229065
Alignment:
Q  9 tgtctcttgtaaataggaccggaggtagtatttt 42  Q
    ||||||||||||||||||||||||| ||||||||    
T  2229098 tgtctcttgtaaataggaccggagggagtatttt 2229065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 25848087 - 25848116
Alignment:
Q  9 tgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||    
T  25848087 tgtctcttgtaaataggaccggaggtagta 25848116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33642494 - 33642457
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  33642494 aagtaaattatctcttgtaaataggaccggagggagta 33642457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33837616 - 33837579
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  33837616 aagtaaattgtctcttgtaaatagaaccggagggagta 33837579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22781918 - 22781886
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    ||||||||||| |||||||||||||||||||||    
T  22781918 aagtaaattgtttcttgtaaataggaccggagg 22781886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32159146 - 32159178
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggagg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  32159146 aagtaaattgtctcttgtaaataggatcggagg 32159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23248780 - 23248817
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23248780 aagtaaattgtctcttgtaaataggaccggaggtagta 23248817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5909583 - 5909621
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtat 39  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  5909583 aagtaaattgtctcttgtaaataggaccggaggaagtat 5909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5347834 - 5347871
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  5347834 aagtaaattgtctcttgtaaataggaccggagggagta 5347871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35427771 - 35427808
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35427771 aagtaaattgtctcttgtaaataggaccggagggagta 35427808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 8562631 - 8562675
Alignment:
Q  52 tgggtgggtcgtggcccaccttggctcatacaaagctctgccact 96  Q
    |||||||||||||||||||||| || |||||||||| ||||||||    
T  8562631 tgggtgggtcgtggcccaccttagcccatacaaagccctgccact 8562675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12763265 - 12763226
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  12763265 aagtaaattgtctcttgtaaataggaccgaagggagtatt 12763226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 7107752 - 7107782
Alignment:
Q  11 tctcttgtaaataggaccggaggtagtattt 41  Q
    |||||||||||||||||||||||||||||||    
T  7107752 tctcttgtaaataggaccggaggtagtattt 7107782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 10599431 - 10599469
Alignment:
Q  4 taaattgtctcttgtaaataggaccggaggtagtatttt 42  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  10599431 taaattgtctcttgtaaataggatcggagggagtatttt 10599469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7463485 - 7463448
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  7463485 aagtaaattgtttcttgtaaataggaccggagggagta 7463448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15074658 - 15074621
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  15074658 aagtaaattgtttcttgtaaataggaccggagggagta 15074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35990 - 35951
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  35990 aagtaaattgtctcttgtaaataggaccggagggagtatt 35951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11066 - 11027
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  11066 aagtaaattgtctcttgtaaaaaggaccggagggagtatt 11027  T

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Target: scaffold0144 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38861 - 38822
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtatt 40  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  38861 aagtaaattgtctcttgtaactaggaccggagatagtatt 38822  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29280 - 29243
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagta 38  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  29280 aagtaaattgtttcttgtaaataggaccggagggagta 29243  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 492417 - 492457
Alignment:
Q  1 aagtaaattgtctcttgtaaataggaccggaggtagtattt 41  Q
    ||||||||||| ||||||||||||||| ||||| |||||||    
T  492417 aagtaaattgtttcttgtaaataggactggagggagtattt 492457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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