View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_2 (Length: 676)
Name: NF6758_low_2
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Original strand, 338419 - 339056
Alignment:
| Q |
18 |
acatcaactgctattactcttacaaattatccacggaaacattgtaaccgaaacagtttgtgtaacatacatttagatgcctaacacacctggtcttttg |
117 |
Q |
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| T |
338419 |
acatcaactgctattactcttacaaattatccacggaaacattgtaaccgaaacagtttgtgtaacatacatttagatgcctaacacacctggtcttttg |
338518 |
T |
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| Q |
118 |
aaattaactaaattcttgaggactagtacaattatcactacctatcttttctcttcatctttttattttgctggtgttacgttttgcatgaaaatatagt |
217 |
Q |
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| T |
338519 |
aaattaagtaaattcttgaggactagtacaattatcactacctatcttttctcttcatctttttattttgctggtgttacgttttgcatgaaaatatagt |
338618 |
T |
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| Q |
218 |
atatttttgctgcattaactatgcagctgaatttgataaactttggtacttaataccaattttgcattgtattcttatgagggtacaacatttaaggaaa |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
338619 |
atttttttgctgcattaactatgcagctgaatttgataaactttggtacttaataccatttttgcattgtattcttatgagggtacaacatttaaggaaa |
338718 |
T |
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| Q |
318 |
gcatattgggatacaataatatattaaaaattgttgtttgggttgatactaaatattttttactttggttaaatgtcaggcaagtgatgtccttgcagtg |
417 |
Q |
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| T |
338719 |
gcatattgggatacaataatatattaaaaattgttgtgtgggttgatactaaatattttttactttggttaaatgtcaggcaagtgatgtccttgcagta |
338818 |
T |
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| Q |
418 |
gagctcttacagaaggatgcacgtcttacagtttgtggagaattaggaagagaatgtccggctggaacgtaagtccatcttgagatatttgtatcactaa |
517 |
Q |
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| T |
338819 |
gagctcttacagaaggatgcacgtcttacagtttgtggagaattaggaagagaatgtccggctggaacgtaagtccatcttgagatatttgtatcactaa |
338918 |
T |
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| Q |
518 |
agtgaaactaatcaaagttatttttaagcttaacagatgaaaaggatgcatgagatgaaaaattgtatcttaatgtgtatataagttttcaataaggcaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
338919 |
agtgaaactaatcaaagttatttttaagcttaacagatgaaaagaatgcatgagatcaaaaattgtatcttaatatgtatataagttttcaataaggcaa |
339018 |
T |
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| Q |
618 |
ctggaataattgcgagtcatgcatattacctgtaacct |
655 |
Q |
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| T |
339019 |
ctggaataattgcgagtcatgcatattacctgtaacct |
339056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 491
Target Start/End: Original strand, 42174523 - 42174621
Alignment:
| Q |
393 |
tcaggcaagtgatgtccttgcagtggagctcttacagaaggatgcacgtcttacagtttgtggagaattaggaagagaatgtccggctggaacgtaagt |
491 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||| | ||| | | | ||||||||| ||||||| |||||| | |||||||||||| |
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| T |
42174523 |
tcaggcaagtgatgtccttgcagtagagcttttacagaaggatgcaaggcttgctgctattggagaattgggaagagcatgtcctggtggaacgtaagt |
42174621 |
T |
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