View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6758_low_20 (Length: 245)

Name: NF6758_low_20
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6758_low_20
NF6758_low_20
[»] chr4 (3 HSPs)
chr4 (87-230)||(47965341-47965481)
chr4 (37-78)||(47965558-47965599)
chr4 (91-139)||(52525824-52525872)
[»] chr3 (8 HSPs)
chr3 (87-180)||(32077328-32077418)
chr3 (96-139)||(5578021-5578064)
chr3 (35-78)||(5578169-5578212)
chr3 (87-138)||(8507115-8507166)
chr3 (35-78)||(4737803-4737846)
chr3 (35-78)||(32077498-32077541)
chr3 (35-78)||(51646890-51646933)
chr3 (87-138)||(51647013-51647064)
[»] chr8 (1 HSPs)
chr8 (35-78)||(14836404-14836447)
[»] chr1 (2 HSPs)
chr1 (87-138)||(20602345-20602396)
chr1 (38-78)||(20602226-20602266)
[»] chr7 (1 HSPs)
chr7 (98-139)||(22007484-22007525)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 47965481 - 47965341
Alignment:
Q  87 aataaacaaagtctttcaatttcaactcacagctgcattggtaacatacacacaattcctattaccgataaacaacatcttcccaactgcattggagaag 186  Q
    |||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  47965481 aataaacacagtctttcaatttcaactcacaagtgcatcggtaacatacacacaattcctattaccgataaaca---tcttcccaactgcattggagaag 47965385  T
Q  187 aaagaccgtgtaaactaacaatcctattaccagtaaactttgat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47965384 aaagaccgtgtaaactaacaatcctattaccagtaaactttgat 47965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 47965599 - 47965558
Alignment:
Q  37 tttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  47965599 tttctaatatgaataacattgctaacaatttgtgccaaccct 47965558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 52525872 - 52525824
Alignment:
Q  91 aacaaagtctttcaatttcaactcacagctgcattggtaacatacacac 139  Q
    |||| ||||||||||||||||| |||| || ||||||||||||||||||    
T  52525872 aacatagtctttcaatttcaacacacaactacattggtaacatacacac 52525824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 32077418 - 32077328
Alignment:
Q  87 aataaacaaagtctttcaatttcaactcacagctgcattggtaacatacacacaattcctattaccgataaacaacatcttcccaactgcattg 180  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  |||| ||  ||||||||||| |||   |||||||||||||||||||||    
T  32077418 aataaacaaagtctttcaatttcaactcacaactgcattggtaaagtacatacggttcctattaccaata---aacatcttcccaactgcattg 32077328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 5578064 - 5578021
Alignment:
Q  96 agtctttcaatttcaactcacagctgcattggtaacatacacac 139  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  5578064 agtctttcaatttcaactcacaactgcattggtatcatacacac 5578021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 5578212 - 5578169
Alignment:
Q  35 tatttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  5578212 tatttctaatatgaataacattgttaacaatttgtgccaaccct 5578169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 8507166 - 8507115
Alignment:
Q  87 aataaacaaagtctttcaatttcaactcacagctgcattggtaacatacaca 138  Q
    ||||||||  ||||||||||||||||||||| || |||||||||||||||||    
T  8507166 aataaacactgtctttcaatttcaactcacaacttcattggtaacatacaca 8507115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 4737846 - 4737803
Alignment:
Q  35 tatttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    |||||||||||||||||| |||| |||||| |||||||||||||    
T  4737846 tatttctaatatgaataacattgctaacaaattgtgccaaccct 4737803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 32077541 - 32077498
Alignment:
Q  35 tatttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||    
T  32077541 tatttctaatatgaataacattgctaacaatttatgccaaccct 32077498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 51646890 - 51646933
Alignment:
Q  35 tatttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    |||||||||||||||||| |||| |||||||||||| |||||||    
T  51646890 tatttctaatatgaataacattgttaacaatttgtgtcaaccct 51646933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 51647013 - 51647064
Alignment:
Q  87 aataaacaaagtctttcaatttcaactcacagctgcattggtaacatacaca 138  Q
    ||||||||  |||||||||||||| |||||| || |||||||||||||||||    
T  51647013 aataaacactgtctttcaatttcatctcacaacttcattggtaacatacaca 51647064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 14836404 - 14836447
Alignment:
Q  35 tatttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  14836404 tatttctaatatgaataacattgttaacaatttgtgccaaccct 14836447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 20602345 - 20602396
Alignment:
Q  87 aataaacaaagtctttcaatttcaactcacagctgcattggtaacatacaca 138  Q
    ||||||||  ||||||||||||||||||||| || |||||||||||||||||    
T  20602345 aataaacactgtctttcaatttcaactcacaacttcattggtaacatacaca 20602396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 20602226 - 20602266
Alignment:
Q  38 ttctaatatgaataaaattggtaacaatttgtgccaaccct 78  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  20602226 ttctaatatgaataacattgttaacaatttgtgccaaccct 20602266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 22007484 - 22007525
Alignment:
Q  98 tctttcaatttcaactcacagctgcattggtaacatacacac 139  Q
    ||||||| |||||| |||||| ||||||||||||||||||||    
T  22007484 tctttcagtttcaagtcacagttgcattggtaacatacacac 22007525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University