View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_23 (Length: 240)
Name: NF6758_low_23
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_23 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: scaffold0408 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10871 - 10652
Alignment:
| Q |
1 |
tagaaaacaatgcaaattataaacacatgcttcacacaatnnnnnnntgaagattttattctgtgggaatataccacgcattaaaattagatgatttcac |
100 |
Q |
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| T |
10871 |
tagaaaacaatgcaaattataaacacatgcttcacacaataaaaaa-tgaagattttat-ctgtgggaatataccacgcattaaaattagatgatttcac |
10774 |
T |
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| Q |
101 |
gtatgattaatgcatatttggaagagcttattaaaatgaacaaaaaatcacaatattaaatagatgatttggttagttttaatttctcattcttatttat |
200 |
Q |
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| T |
10773 |
gtatgattaatgcatatttggaagagcttattaaaatgaacaaaatatcacaatattaaatagatgatttggttagttttaatttctcattcttatttat |
10674 |
T |
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| Q |
201 |
tgacttattgtcattagaaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10673 |
tgacttattgtcattagaaaat |
10652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14785702 - 14785483
Alignment:
| Q |
1 |
tagaaaacaatgcaaattataaacacatgcttcacacaatnnnnnnntgaagattttattctgtgggaatataccacgcattaaaattagatgatttcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14785702 |
tagaaaacaatgcaaattataaacacatgcttcacacaataaaaaa-tgaagattttat-ctgtgggaatataccacgcattaaaattagatgatttcac |
14785605 |
T |
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| Q |
101 |
gtatgattaatgcatatttggaagagcttattaaaatgaacaaaaaatcacaatattaaatagatgatttggttagttttaatttctcattcttatttat |
200 |
Q |
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| T |
14785604 |
gtatgattaatgcatatttggaagagcttattaaaatgaacaaaatatcacaatattaaatagatgatttggttagttttaatttctcattcttatttat |
14785505 |
T |
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| Q |
201 |
tgacttattgtcattagaaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
14785504 |
tgacttattgtcattagaaaat |
14785483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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