View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_24 (Length: 240)
Name: NF6758_low_24
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 6710476 - 6710333
Alignment:
| Q |
1 |
ccaataaaattatgacagaaataaaaggaattcataagaaaagtaaagaacgacaatcagatgaaaaaagtaatttggaggaatactagtttttaaggag |
100 |
Q |
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| T |
6710476 |
ccaaaaaaattatgacagaaataaaaggaattcataagaaaagtaaagagcgacaatcagatgaaaaaagtaatttggaggaatactagtttttaaggag |
6710377 |
T |
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| Q |
101 |
cctgaatagttgtcacaattcacaaaggtgcaataacattcgtg |
144 |
Q |
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| T |
6710376 |
cctgaatagttgtcacaattcacaaaggtgcaataacattcgtg |
6710333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 6710307 - 6710234
Alignment:
| Q |
167 |
ttataaggtaaaaactactcgaccacggcacaccaatcgcagtaaaatatgtaaagcacagaactcaaacaaca |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6710307 |
ttataaggtaaaaactactcgaccacggcacaccaatcgcagtaaaatatgtaaagcacagaactcaaacaaca |
6710234 |
T |
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