View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_26 (Length: 235)
Name: NF6758_low_26
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 5690918 - 5690711
Alignment:
| Q |
9 |
gacatcatcacattgttgaagaatgagaggttacatgtggattatagtttgaggtatgttaaataaagatggcaatcttgtgggtgggtggttgtgttgt |
108 |
Q |
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| T |
5690918 |
gacatcatcacattgttgaagaatgagaggttacatgtggattatagtttgaggtatgttaaataaagtgggcaatcttgtgggtgggtggttgtgttgt |
5690819 |
T |
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| Q |
109 |
tgagattgaaagaaactcctggtaaatgaggtgattgtgttggtgttatttttggcgaattgagtggtggcttgggtgtgtatgagaatgagaacaaagg |
208 |
Q |
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| T |
5690818 |
tgagattgaaagaaactcctggtaaatgaggtgattgtgttggtgttatttttggcgaattgagtggtggcttgggtgtgtatgagaatgagaacaaagg |
5690719 |
T |
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| Q |
209 |
ggtgaagt |
216 |
Q |
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| T |
5690718 |
ggtgaagt |
5690711 |
T |
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