View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6758_low_27 (Length: 230)
Name: NF6758_low_27
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 34587156 - 34587338
Alignment:
| Q |
19 |
gttatgttatgggttgatgagaacctcactatataaacctttccatatgggtcctgtccagcgtggatgggatgtttagagaggaactttctccatccct |
118 |
Q |
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| T |
34587156 |
gttatgttatgggttgatgagaacctcactatataaacctttccatatgggtcccgtccagcgtggatgggatgtttagagaggaactttctccatccct |
34587255 |
T |
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| Q |
119 |
tacttacatttcgnnnnnnncaacatacatctctaggagtatactttcatatacggtataatttgttcgaaagtgtactttag |
201 |
Q |
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||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34587256 |
cacttacatttctaaaaaaacaacatacagctctagaagtatactttcatatacggtataatttgttcgaaagtgtactttag |
34587338 |
T |
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