View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6758_low_5 (Length: 403)
Name: NF6758_low_5
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6758_low_5 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Complemental strand, 38129854 - 38129474
Alignment:
| Q |
21 |
gtaattgatagaaagtcggtgaacttatgaatacacaataagcacagactgataaattttatgttttaagggaatcctcttgaaatggccagaacnnnnn |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38129854 |
gtaattgatagaaagtcggtgaacttatgaatacacaataagcacagactgataaattttatgttttaagggaatcctcttgaaatggccagaacttttg |
38129755 |
T |
|
| Q |
121 |
nnnaccatgtctacagaagtatccaactttattcgcaagaaataacattcccctttagcatatattagaaaaactaataatcattcactaacatgtaaat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38129754 |
tttaccatgtctacagaagtatccaactttattcgcaagaaataacattcccctttagcatatattagaaaaactaataatcattcactaacatgtaaat |
38129655 |
T |
|
| Q |
221 |
atataagcacatacatctaattatatgttaccaacttgcatgtataagaatacattctaagaaaggtttggactttctcgagtagaattcattttgcttt |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38129654 |
atataagcacatacatctaattat--gttaccaacttgcatctataagaatacattctaagaaaggtttggactttctcgagtagaattcattttgcttt |
38129557 |
T |
|
| Q |
321 |
tagaattgattctaactcaaagctacaatttcgagcttttgccatgcaattgatttttagcctcaaatttattgttcatctca |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38129556 |
tagaattgattctaactcaaagctacaatttcgagcttttgccatgcaattgatttttagcctcaaatttattgttcatctca |
38129474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 3476545 - 3476480
Alignment:
| Q |
296 |
tctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttg |
361 |
Q |
| |
|
||||||||| |||| ||||||| | |||||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
3476545 |
tctcgagtaaaattgattttgcctccagaattgattctaacttaaagctaaaaattagagcttttg |
3476480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 396
Target Start/End: Original strand, 37541338 - 37541367
Alignment:
| Q |
367 |
caattgatttttagcctcaaatttattgtt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37541338 |
caattgatttttagcctcaaatttattgtt |
37541367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 45369122 - 45369199
Alignment:
| Q |
286 |
gtttggactttctcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgcc |
363 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||||||||||| ||||| |||||| |||| ||||||||||| |
|
|
| T |
45369122 |
gtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaattcggagcttttgcc |
45369199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 41516959 - 41517043
Alignment:
| Q |
298 |
tcgagtagaattcattttgcttttagaattgattctaactcaaagctacaatttcgagcttttgcc-atgcaattgatttttagc |
381 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||||| ||| || ||||| ||| ||||||| | ||||||||||||||| |
|
|
| T |
41516959 |
tcgagtagaattgattttgcgtttaaaattgattctaacttgaagttagaatttggagtttttgcctcttcaattgatttttagc |
41517043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 33560686 - 33560637
Alignment:
| Q |
296 |
tctcgagtagaattcattttgcttttagaattgattctaactcaaagcta |
345 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
33560686 |
tctcgagtagaattgattttgcctctagaattgattctaaccgaaagcta |
33560637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University