View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6758_low_7 (Length: 393)

Name: NF6758_low_7
Description: NF6758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6758_low_7
NF6758_low_7
[»] chr2 (9 HSPs)
chr2 (1-381)||(38129181-38129561)
chr2 (55-94)||(5977226-5977265)
chr2 (80-131)||(45000426-45000477)
chr2 (52-94)||(37541338-37541380)
chr2 (53-94)||(10661339-10661380)
chr2 (114-159)||(40959569-40959614)
chr2 (105-142)||(43341049-43341086)
chr2 (90-142)||(11650678-11650730)
chr2 (51-95)||(44147952-44147996)
[»] chr4 (9 HSPs)
chr4 (86-142)||(24364099-24364155)
chr4 (98-142)||(23104702-23104746)
chr4 (85-139)||(34155814-34155868)
chr4 (100-141)||(48575520-48575561)
chr4 (90-158)||(49979816-49979885)
chr4 (91-141)||(45649205-45649255)
chr4 (100-160)||(5835815-5835875)
chr4 (85-141)||(21592549-21592605)
chr4 (56-92)||(25952455-25952491)
[»] chr6 (3 HSPs)
chr6 (80-139)||(3525041-3525100)
chr6 (85-136)||(46201-46252)
chr6 (88-141)||(765293-765346)
[»] chr3 (6 HSPs)
chr3 (80-160)||(24916600-24916680)
chr3 (85-160)||(23263998-23264073)
chr3 (53-142)||(2409946-2410035)
chr3 (100-142)||(44771864-44771906)
chr3 (114-160)||(50600323-50600369)
chr3 (86-139)||(42913176-42913229)
[»] chr8 (13 HSPs)
chr8 (86-169)||(20169493-20169576)
chr8 (80-142)||(37159383-37159445)
chr8 (66-142)||(5400120-5400196)
chr8 (106-158)||(32767515-32767567)
chr8 (90-141)||(5219245-5219296)
chr8 (80-139)||(13418734-13418793)
chr8 (85-131)||(4662825-4662871)
chr8 (80-141)||(32928008-32928069)
chr8 (100-156)||(3245507-3245563)
chr8 (90-158)||(9461430-9461498)
chr8 (80-136)||(32994153-32994209)
chr8 (85-157)||(35775514-35775586)
chr8 (114-142)||(43031392-43031420)
[»] chr7 (3 HSPs)
chr7 (86-169)||(44391203-44391286)
chr7 (80-158)||(40491694-40491772)
chr7 (100-136)||(35812444-35812480)
[»] chr5 (5 HSPs)
chr5 (53-94)||(10860099-10860140)
chr5 (80-131)||(29923016-29923067)
chr5 (105-158)||(35591043-35591096)
chr5 (105-141)||(17741966-17742002)
chr5 (58-94)||(37877105-37877141)
[»] chr1 (8 HSPs)
chr1 (85-158)||(7524234-7524307)
chr1 (85-142)||(47899374-47899431)
chr1 (105-142)||(50419123-50419160)
chr1 (80-139)||(11817227-11817286)
chr1 (107-140)||(6041802-6041835)
chr1 (107-156)||(6744975-6745024)
chr1 (100-141)||(41614431-41614472)
chr1 (114-158)||(40662896-40662940)
[»] scaffold0036 (1 HSPs)
scaffold0036 (90-155)||(845-910)


Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 38129561 - 38129181
Alignment:
Q  1 gcttttagaattgattctaactcaaagctacaatttcgagcttttgccatgcaattgatttttagcctcaaatttattgttcatctcacttttagttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129561 gcttttagaattgattctaactcaaagctacaatttcgagcttttgccatgcaattgatttttagcctcaaatttattgttcatctcacttttagttaga 38129462  T
Q  101 atccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaacacataagaaataatactatgatacgacaaaatggtgaaatata 200  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38129461 atccattttacagaatcaattcattcaaaatcaatttttgtcgcaacagaaccaaacacataagaaataatactatgatacgacaaaatgatgaaatata 38129362  T
Q  201 attagacgtctacatcatcaatacaaagttattaaactcataacccttaaaatcatgctatgcaactactaaccttccaaactagaacccatgtcactag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129361 attagacgtctacatcatcaatacaaagttattaaactcataacccttaaaatcatgctatgcaactactaaccttccaaactagaacccatgtcactag 38129262  T
Q  301 ctaaacaccttgcagtcctagcagcttgatccaatgaagcatcaaccaagggatgaaaacatatatgatcaacaacaccaa 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129261 ctaaacaccttgcagtcctagcagcttgatccaatgaagcatcaaccaagggatgaaaacatatatgatcaacaacaccaa 38129181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 5977226 - 5977265
Alignment:
Q  55 ttgatttttagcctcaaatttattgttcatctcactttta 94  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  5977226 ttgatttttaacctcaaatttattgttcacctcactttta 5977265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 45000477 - 45000426
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaat 131  Q
    |||| ||||||||||| || |||| ||||||||||||||||| |||||||||    
T  45000477 ttcaactcacttttaggtaaaatcaattttacataatcaatttattcaaaat 45000426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 37541338 - 37541380
Alignment:
Q  52 caattgatttttagcctcaaatttattgttcatctcactttta 94  Q
    |||||||||||||||||||||||||||||| | || |||||||    
T  37541338 caattgatttttagcctcaaatttattgtttaacttactttta 37541380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 10661380 - 10661339
Alignment:
Q  53 aattgatttttagcctcaaatttattgttcatctcactttta 94  Q
    ||||||||||||||||||| || |||||||| ||||||||||    
T  10661380 aattgatttttagcctcaagttaattgttcaactcactttta 10661339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 40959614 - 40959569
Alignment:
Q  114 aatcaattcattcaaaattaatttttgtcgcaacagaaccaaacac 159  Q
    |||||||||||||||||| | |||||||||| ||| ||||||||||    
T  40959614 aatcaattcattcaaaatcattttttgtcgccacataaccaaacac 40959569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 43341086 - 43341049
Alignment:
Q  105 attttacataatcaattcattcaaaattaatttttgtc 142  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  43341086 attttacataatcaatttatttaaaattaatttttgtc 43341049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 11650730 - 11650678
Alignment:
Q  90 ttttagttagaatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    ||||||| | |||| | ||||||||||||||||| ||||||| ||||||||||    
T  11650730 ttttagtcataatcaaatttacataatcaattcactcaaaatcaatttttgtc 11650678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 44147996 - 44147952
Alignment:
Q  51 gcaattgatttttagcctcaaatttattgttcatctcacttttag 95  Q
    ||||||||||||||   |||||||||||||||| |||||||||||    
T  44147996 gcaattgatttttactttcaaatttattgttcaactcacttttag 44147952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 24364155 - 24364099
Alignment:
Q  86 tcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  24364155 tcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtc 24364099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 23104702 - 23104746
Alignment:
Q  98 agaatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  23104702 agaatcaattttacataatcaattcatttaaaattaatttttgtc 23104746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 34155814 - 34155868
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaattttt 139  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||  |||||||    
T  34155814 ctcacttttagttagaatcaattttacataattaattcactcaaaaacaattttt 34155868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 48575520 - 48575561
Alignment:
Q  100 aatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  48575520 aatcaattttacaaaatcaattcattcaaaattaatttttgt 48575561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 49979816 - 49979885
Alignment:
Q  90 ttttagttagaatccattttacataatcaattcattcaaaattaatttttgtc-gcaacagaaccaaaca 158  Q
    ||||||| | |||| |||||||||||| |||| ||||||||||||||||||||  ||||| |||||||||    
T  49979816 ttttagtcaaaatcaattttacataattaatttattcaaaattaatttttgtcaccaacaaaaccaaaca 49979885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 45649255 - 45649205
Alignment:
Q  91 tttagttagaatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    |||||| | ||||||||||||  ||| ||||||||||||||||||||||||    
T  45649255 tttagtcataatccattttactaaattaattcattcaaaattaatttttgt 45649205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 5835815 - 5835875
Alignment:
Q  100 aatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaacaca 160  Q
    |||| ||| |||| |||||||||| ||||||| |||||| ||| ||||| |||||||||||    
T  5835815 aatcaattctacaaaatcaattcaatcaaaatcaattttcgtcacaacataaccaaacaca 5835875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 21592549 - 21592605
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    ||||||||||||| ||||| || ||| | |||||||||||||||||| || ||||||    
T  21592549 ctcacttttagttggaatcaatcttataaaatcaattcattcaaaatcaaattttgt 21592605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 25952455 - 25952491
Alignment:
Q  56 tgatttttagcctcaaatttattgttcatctcacttt 92  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  25952455 tgatttttagactcaaatttattgttcacctcacttt 25952491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 3525041 - 3525100
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaattttt 139  Q
    |||| |||||||||||  | |||| |||||||||||||||||||||||||||||||||||    
T  3525041 ttcaactcacttttagccacaatcaattttacataatcaattcattcaaaattaattttt 3525100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 46252 - 46201
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaatt 136  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||| ||||    
T  46252 ctcacttttagttagaatcaattttacagaatcaattcactcaaaatcaatt 46201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 765346 - 765293
Alignment:
Q  88 acttttagttagaatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    |||||||||||||||| |||||||| ||||| |||| ||||||| |||| ||||    
T  765346 acttttagttagaatcaattttacacaatcatttcactcaaaatcaattgttgt 765293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 24916600 - 24916680
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaacaca 160  Q
    |||| |||||||||||   ||||| |||||||| |||||| || ||||||||||||||||||| |  ||||||||||||||    
T  24916600 ttcaactcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaacaca 24916680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 23263998 - 23264073
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaacaca 160  Q
    ||||||| || | |||||| |||||||| |||||||||||| |||||||||||||| | | | | |||||||||||    
T  23263998 ctcacttctaatgagaatcaattttacacaatcaattcatttaaaattaatttttgccacgatataaccaaacaca 23264073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 2410035 - 2409946
Alignment:
Q  53 aattgatttttagcctcaaatttattgttcatctcacttttagttagaatc-cattttacataatcaattcattcaaaattaatttttgtc 142  Q
    ||||||||||  ||||||||||||||||||| |||||||| | | ||||||  |||||| | ||||||| |||||||||| | ||||||||    
T  2410035 aattgattttccgcctcaaatttattgttcaactcactttca-tcagaatcaaattttatacaatcaatccattcaaaatcattttttgtc 2409946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 44771864 - 44771906
Alignment:
Q  100 aatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    |||| ||||||||||||||||||||||||||| |||| |||||    
T  44771864 aatcaattttacataatcaattcattcaaaatcaattcttgtc 44771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 50600323 - 50600369
Alignment:
Q  114 aatcaattcattcaaaattaatttttgtcgcaacagaaccaaacaca 160  Q
    |||||||||||||||||| |||||| ||||| | |||||||||||||    
T  50600323 aatcaattcattcaaaataaattttggtcgctagagaaccaaacaca 50600369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 42913176 - 42913229
Alignment:
Q  86 tcacttttagttagaatccattttacataatcaattcattcaaaattaattttt 139  Q
    |||||||||||||||||  |||||| | |||||||||| ||||||| |||||||    
T  42913176 tcacttttagttagaattaattttatacaatcaattcactcaaaatcaattttt 42913229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 20169493 - 20169576
Alignment:
Q  86 tcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaacacataagaaata 169  Q
    |||||||||  || |||| ||| ||||||||||||||||||||||| |||||| | | | ||| |||||||||||||| |||||    
T  20169493 tcacttttaactaaaatcaattctacataatcaattcattcaaaataaattttcgccaccacaaaaccaaacacataataaata 20169576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 37159445 - 37159383
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    |||| ||| |||||||||| |||  |||||||| ||||||||| |||||||||||||||||||    
T  37159445 ttcaactcccttttagttaaaattaattttacacaatcaattcgttcaaaattaatttttgtc 37159383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 5400196 - 5400120
Alignment:
Q  66 cctcaaatttattgttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    ||||||||| |||||||| |||||||||||  | |||| |||||||| |||||||  ||| ||||| ||||||||||    
T  5400196 cctcaaattaattgttcaactcacttttagcaaaaatcaattttacaaaatcaatcaatttaaaatgaatttttgtc 5400120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 32767515 - 32767567
Alignment:
Q  106 ttttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaaca 158  Q
    |||||||||||||||||| |||||||||||| ||||| | |||||| ||||||    
T  32767515 ttttacataatcaattcactcaaaattaattcttgtcaccacagaatcaaaca 32767567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 5219245 - 5219296
Alignment:
Q  90 ttttagttagaatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    ||||||| | |||| ||||||||||||||||||||| |||||||||| ||||    
T  5219245 ttttagtcaaaatcaattttacataatcaattcatttaaaattaattcttgt 5219296  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 13418793 - 13418734
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaattttt 139  Q
    |||| |||||||||||| |||||| ||| ||| ||||||||||| ||||||| |||||||    
T  13418793 ttcaactcacttttagtcagaatcaattctacctaatcaattcactcaaaatcaattttt 13418734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 4662871 - 4662825
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaat 131  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||||    
T  4662871 ctcagttttagtcagaatcaattttacataatcaattcactcaaaat 4662825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 32928008 - 32928069
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    |||| |||| ||||||| |||||| ||||||||||||||||||  ||||||| |||| ||||    
T  32928008 ttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatcaattattgt 32928069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 3245507 - 3245563
Alignment:
Q  100 aatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaa 156  Q
    |||| |||||| | ||||||||||||||||| |||||||| ||||| || |||||||    
T  3245507 aatcaattttatagaatcaattcattcaaaactaatttttttcgcagcaaaaccaaa 3245563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 9461498 - 9461430
Alignment:
Q  90 ttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaaca 158  Q
    ||||||| |||||| |||||| |||||||||| | ||||||| |||||| |||| |  |||||||||||    
T  9461498 ttttagtcagaatcaattttaaataatcaattaactcaaaatcaattttcgtcgaagtagaaccaaaca 9461430  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 32994209 - 32994153
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaatt 136  Q
    |||| |||||||| ||  |||||| |||||||||||||| |||||||||||| ||||    
T  32994209 ttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaatt 32994153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 35775514 - 35775586
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaac 157  Q
    |||||||||| |  |||||  ||||| | |||||||||||| |||||||||||||||| |  |||||||||||    
T  35775514 ctcacttttattatgaatcagttttatagaatcaattcatttaaaattaatttttgtcacctcagaaccaaac 35775586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 43031420 - 43031392
Alignment:
Q  114 aatcaattcattcaaaattaatttttgtc 142  Q
    |||||||||||||||||||||||||||||    
T  43031420 aatcaattcattcaaaattaatttttgtc 43031392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 44391203 - 44391286
Alignment:
Q  86 tcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaacacataagaaata 169  Q
    |||||||||  || |||| ||| ||||||||||||||||||||||| |||||| | | | ||| |||||||||||||| |||||    
T  44391203 tcacttttaactaaaatcaattctacataatcaattcattcaaaataaattttcgccaccacaaaaccaaacacataataaata 44391286  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 40491694 - 40491772
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaaca 158  Q
    |||| |||||||||||| | |||| |||||||| |||||||||| ||||||| |||| ||||| |  ||||||||||||    
T  40491694 ttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgcagaaccaaaca 40491772  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 35812444 - 35812480
Alignment:
Q  100 aatccattttacataatcaattcattcaaaattaatt 136  Q
    |||| |||||||| |||||||||||||||||||||||    
T  35812444 aatcaattttacaaaatcaattcattcaaaattaatt 35812480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 10860140 - 10860099
Alignment:
Q  53 aattgatttttagcctcaaatttattgttcatctcactttta 94  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  10860140 aattgatttttagcctcaactttattgttcaactcactttta 10860099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 29923016 - 29923067
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaat 131  Q
    |||| ||||||| |||| | |||| |||||||||||||||||||||||||||    
T  29923016 ttcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaat 29923067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 35591043 - 35591096
Alignment:
Q  105 attttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaaca 158  Q
    |||||||| |||||||  ||||||||||||||||||||||  || |||||||||    
T  35591043 attttacaaaatcaatcaattcaaaattaatttttgtcgccgcataaccaaaca 35591096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 17742002 - 17741966
Alignment:
Q  105 attttacataatcaattcattcaaaattaatttttgt 141  Q
    |||||| | ||||||||||||||||||||||||||||    
T  17742002 attttaaaaaatcaattcattcaaaattaatttttgt 17741966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 37877105 - 37877141
Alignment:
Q  58 atttttagcctcaaatttattgttcatctcactttta 94  Q
    |||||||||||||||||||||||| | ||||||||||    
T  37877105 atttttagcctcaaatttattgtttaactcactttta 37877141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 7524234 - 7524307
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaaca 158  Q
    ||||||||||||||||||| |||||| | ||||| ||||  |||||| |||| ||||| | |||||||||||||    
T  7524234 ctcacttttagttagaatcaattttatagaatcagttcacccaaaatcaattattgtcaccacagaaccaaaca 7524307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 47899374 - 47899431
Alignment:
Q  85 ctcacttttagttagaatccattttacataatcaattcattcaaaattaatttttgtc 142  Q
    |||||||||||| |||||| |||||||| |||||||||| ||||||| |||| |||||    
T  47899374 ctcacttttagtaagaatcaattttacaaaatcaattcactcaaaatcaattcttgtc 47899431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 50419160 - 50419123
Alignment:
Q  105 attttacataatcaattcattcaaaattaatttttgtc 142  Q
    |||||||||||||||||||||||||||||| |||||||    
T  50419160 attttacataatcaattcattcaaaattaaattttgtc 50419123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 11817286 - 11817227
Alignment:
Q  80 ttcatctcacttttagttagaatccattttacataatcaattcattcaaaattaattttt 139  Q
    |||| ||| ||||||||||||||| |||||||| |||||||||| ||||| | |||||||    
T  11817286 ttcaactcgcttttagttagaatcaattttacaaaatcaattcactcaaactcaattttt 11817227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 6041802 - 6041835
Alignment:
Q  107 tttacataatcaattcattcaaaattaatttttg 140  Q
    |||||| |||||||||||||||||||||||||||    
T  6041802 tttacaaaatcaattcattcaaaattaatttttg 6041835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 6744975 - 6745024
Alignment:
Q  107 tttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaaa 156  Q
    |||||||||||||||||||||||||  ||||||||| |  ||||||||||    
T  6744975 tttacataatcaattcattcaaaatcgatttttgtcactgcagaaccaaa 6745024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 41614431 - 41614472
Alignment:
Q  100 aatccattttacataatcaattcattcaaaattaatttttgt 141  Q
    |||| |||||||||||| |||| |||||||||||||||||||    
T  41614431 aatcaattttacataattaattaattcaaaattaatttttgt 41614472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 40662940 - 40662896
Alignment:
Q  114 aatcaattcattcaaaattaatttttgtcgcaacagaaccaaaca 158  Q
    |||||||||| |||||||||||| |||||  ||||||||||||||    
T  40662940 aatcaattcactcaaaattaattcttgtcaaaacagaaccaaaca 40662896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 910 - 845
Alignment:
Q  90 ttttagttagaatccattttacataatcaattcattcaaaattaatttttgtcgcaacagaaccaa 155  Q
    |||||||| ||||| |||||| | |||||||||||| ||||| |||||||||| | || |||||||    
T  910 ttttagttggaatcaattttagagaatcaattcatttaaaatcaatttttgtcactactgaaccaa 845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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