View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_high_11 (Length: 249)
Name: NF6762_high_11
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_high_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 29356724 - 29356501
Alignment:
| Q |
19 |
gtagacagaaccaaaaccaccctctccaattttattggcaagactaaagttatcagtggcattacttagttctttgtaggtatagattttaacattgtga |
118 |
Q |
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| T |
29356724 |
gtagacagaaccaaaaccaccctctccaattttattggcaagactaaagttatcagtggcattacttagttctttgtaggtatagattttaacattgtga |
29356625 |
T |
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| Q |
119 |
atgcctgaaatatatgttcaaaagtatattcattaaaatctaatactaaaaatagatttcatttttcaatgtcttatatattaaatatccctagaaaact |
218 |
Q |
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| T |
29356624 |
atgcctgaaatatatgttcaaaagtatattcattaaaatctaatactaaaaatagatttcatttttcaatgtcttatatcataaatatc-------aact |
29356532 |
T |
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| Q |
219 |
agtcaaatttaaaaactacaataatacaact |
249 |
Q |
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| T |
29356531 |
agtcaaatttaaaaactacaataatacaact |
29356501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 29363492 - 29363348
Alignment:
| Q |
19 |
gtagacagaaccaaaaccaccctctccaattttattggcaagactaaagttatcagtggcattacttagttctttgtaggtatagattttaacattgtga |
118 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
29363492 |
gtagacagaaccaaaaccaccctctccgattttattggccggactaaagttatcggtggcattccttagttctttgaaggtatagattttaacatcatga |
29363393 |
T |
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| Q |
119 |
atgcctgaaatatatgttcaaaagtatattc-attaaaatctaata |
163 |
Q |
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| T |
29363392 |
atgcttgagatatctgttc-aaagtacattctattaaaatctaata |
29363348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 35535509 - 35535435
Alignment:
| Q |
19 |
gtagacagaaccaaaaccaccctctccaattttattggcaagactaaagttatcagtggcattacttagttcttt |
93 |
Q |
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| T |
35535509 |
gtagacagaaccaaaaccaccctctccaattttattggcaggactaaagttatcagtcgcattacttagttcttt |
35535435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 27005738 - 27005808
Alignment:
| Q |
23 |
acagaaccaaaaccaccctctccaattttattggcaagactaaagttatcagtggcattacttagttcttt |
93 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
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| T |
27005738 |
acagaacaaaaaccaccctctccaattttattggcaggactaaaattatcagtcgcattacttagttcttt |
27005808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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