View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6762_high_2 (Length: 517)

Name: NF6762_high_2
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6762_high_2
NF6762_high_2
[»] chr3 (19 HSPs)
chr3 (19-510)||(52041333-52041823)
chr3 (19-141)||(42655772-42655894)
chr3 (19-140)||(22424319-22424440)
chr3 (28-141)||(39484766-39484880)
chr3 (23-141)||(1141743-1141861)
chr3 (213-334)||(32208054-32208175)
chr3 (19-140)||(1529165-1529287)
chr3 (70-141)||(15291460-15291530)
chr3 (201-308)||(29214729-29214835)
chr3 (290-341)||(36924667-36924718)
chr3 (83-141)||(15996392-15996450)
chr3 (210-331)||(35044094-35044215)
chr3 (226-297)||(36924412-36924482)
chr3 (211-299)||(42225960-42226048)
chr3 (34-101)||(11582613-11582680)
chr3 (200-300)||(27213986-27214086)
chr3 (258-326)||(46344709-46344777)
chr3 (93-140)||(49235500-49235547)
chr3 (290-322)||(22910695-22910727)
[»] chr2 (16 HSPs)
chr2 (203-341)||(879441-879579)
chr2 (19-142)||(29280083-29280206)
chr2 (19-140)||(38996469-38996590)
chr2 (20-140)||(38955790-38955910)
chr2 (51-142)||(22625368-22625459)
chr2 (69-142)||(32281484-32281557)
chr2 (70-141)||(6667462-6667532)
chr2 (19-133)||(10601248-10601360)
chr2 (83-141)||(28922428-28922486)
chr2 (83-141)||(28926074-28926133)
chr2 (70-140)||(28125536-28125606)
chr2 (211-331)||(3636379-3636499)
chr2 (231-341)||(14812284-14812394)
chr2 (72-137)||(21922337-21922402)
chr2 (201-258)||(38402505-38402562)
chr2 (206-271)||(39491077-39491142)
[»] chr4 (19 HSPs)
chr4 (19-137)||(9451245-9451363)
chr4 (19-140)||(24257703-24257825)
chr4 (232-326)||(13597876-13597970)
chr4 (19-140)||(27067874-27067995)
chr4 (77-142)||(6898759-6898824)
chr4 (71-140)||(12094856-12094925)
chr4 (213-331)||(37780296-37780411)
chr4 (201-284)||(9093647-9093730)
chr4 (295-339)||(33755855-33755899)
chr4 (27-142)||(10427605-10427719)
chr4 (211-322)||(43361816-43361927)
chr4 (70-123)||(7810064-7810116)
chr4 (27-140)||(9199750-9199863)
chr4 (208-300)||(10097970-10098062)
chr4 (27-97)||(9201332-9201402)
chr4 (77-142)||(4883591-4883656)
chr4 (254-331)||(50783562-50783639)
chr4 (224-300)||(4512794-4512870)
chr4 (263-307)||(16530226-16530270)
[»] chr6 (12 HSPs)
chr6 (20-145)||(826682-826807)
chr6 (19-140)||(21762022-21762143)
chr6 (19-137)||(30836430-30836548)
chr6 (27-142)||(31442515-31442630)
chr6 (71-141)||(31665629-31665700)
chr6 (71-138)||(15296147-15296215)
chr6 (53-140)||(20915980-20916067)
chr6 (243-303)||(30438095-30438154)
chr6 (85-140)||(26840415-26840470)
chr6 (70-140)||(7867948-7868018)
chr6 (211-300)||(7984547-7984636)
chr6 (204-300)||(40018-40114)
[»] chr8 (14 HSPs)
chr8 (212-339)||(42192829-42192956)
chr8 (21-140)||(3193126-3193244)
chr8 (27-140)||(26083903-26084016)
chr8 (71-142)||(42315340-42315412)
chr8 (28-141)||(26981034-26981147)
chr8 (71-140)||(23828343-23828413)
chr8 (255-331)||(105426-105502)
chr8 (71-141)||(45244285-45244356)
chr8 (79-140)||(4966440-4966502)
chr8 (27-101)||(5334312-5334386)
chr8 (79-140)||(9888957-9889019)
chr8 (94-141)||(7496757-7496804)
chr8 (205-239)||(27134652-27134686)
chr8 (202-285)||(13018457-13018540)
[»] chr1 (18 HSPs)
chr1 (20-140)||(22964007-22964127)
chr1 (242-341)||(11900105-11900202)
chr1 (37-129)||(3908796-3908888)
chr1 (69-140)||(15700721-15700792)
chr1 (233-293)||(43325438-43325497)
chr1 (53-141)||(46555501-46555590)
chr1 (263-331)||(38737300-38737368)
chr1 (230-286)||(50746512-50746568)
chr1 (204-300)||(11818132-11818228)
chr1 (201-301)||(32815219-32815319)
chr1 (290-341)||(30400953-30401004)
chr1 (290-341)||(30407510-30407561)
chr1 (268-326)||(9301047-9301105)
chr1 (285-339)||(50745241-50745295)
chr1 (202-239)||(3306733-3306770)
chr1 (91-140)||(24819183-24819232)
chr1 (201-261)||(30401010-30401069)
chr1 (201-261)||(30407567-30407626)
[»] chr5 (10 HSPs)
chr5 (19-140)||(31981793-31981913)
chr5 (219-327)||(36308190-36308299)
chr5 (27-101)||(9045162-9045236)
chr5 (71-140)||(37337323-37337393)
chr5 (255-341)||(32839774-32839856)
chr5 (71-141)||(26110687-26110758)
chr5 (70-139)||(22780060-22780128)
chr5 (71-142)||(11300764-11300836)
chr5 (211-258)||(14156970-14157017)
chr5 (203-284)||(34338875-34338956)
[»] chr7 (8 HSPs)
chr7 (232-326)||(9639275-9639369)
chr7 (27-140)||(20077299-20077412)
chr7 (51-139)||(6253382-6253470)
chr7 (77-140)||(39742301-39742364)
chr7 (28-101)||(4407816-4407889)
chr7 (230-300)||(47992413-47992483)
chr7 (70-140)||(48850726-48850795)
chr7 (216-284)||(46515459-46515527)
[»] scaffold0172 (1 HSPs)
scaffold0172 (209-322)||(19410-19523)
[»] scaffold0065 (1 HSPs)
scaffold0065 (209-301)||(49112-49204)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 52041333 - 52041823
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  52041333 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgcttgggtgatggaaggaaaatattaggttaaaattagggtgaacaatagcttgacca 52041432  T
Q  119 aacaagctttagtaagaaagatatgttatcctaatggagtatttaagtctaa-ttgtattacttgatgtaatcatctttatcatagggtcttactaacaa 217  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||    
T  52041433 gacaagctttagtaagaaagatatgttatcctaatggagtatttaagtctaatttgtattatttgatgtaatcgtctttatcatagggtcttgctaacaa 52041532  T
Q  218 gtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  52041533 gtgtcctaaagacattgtttaatgaaaccataaatagaaatattctc-tcaaaacataaatcaaacatatgaaaaagcaatattcacacatatttttatg 52041631  T
Q  318 caaaagttactactattgattgctataaccccaaagacattagtcagcagttttcttatattaatacacaattcatttaatacttggacattttctctct 417  Q
    ||||||||| ||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52041632 caaaagttattactattgattgctaaaaccccaaaggcatttgttagcagttttcttatattaatacacaattcattt-atacttggacattttctctct 52041730  T
Q  418 tccacaacctctatcaaaatttctaatttggtaccagagcacatggtatcctccgcgagaatatgttatgatgcacttgaatgatattattgg 510  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  52041731 tccacgacctctatcaaaattttgaatttggtaccagagcacatggtatcctccgcgagaatatgttatgatgcacttgagtgattttattgg 52041823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 42655894 - 42655772
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||||||||||||||||| |||||| |||||||||||| |||||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  42655894 acttagcttgatgagtaggaaaaacactaatcaaaattaaatgcttgggtgatgaagggaaaatattatgttaaaattagggtgaacaatagcttgacca 42655795  T
Q  119 aacaagctttagtaagaaagata 141  Q
     ||||||||| ||||||||||||    
T  42655794 gacaagctttggtaagaaagata 42655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 22424319 - 22424440
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22424319 acttagcttaatgagtaggaaaagtactaacaaaaattaaatgtttaggtgatggagggaaaatattaggttaaaattagggtgaacaatagcttgacca 22424418  T
Q  119 aacaagctttagtaagaaagat 140  Q
     | || ||||||||||||||||    
T  22424419 gataaactttagtaagaaagat 22424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 39484766 - 39484880
Alignment:
Q  28 gatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaaca-atagcttgaccaaacaagct 126  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  39484766 gatgagtaggaaaagcattaattaaaattaaatgtttgggtgatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagct 39484865  T
Q  127 ttagtaagaaagata 141  Q
    |||||||||||||||    
T  39484866 ttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 1141861 - 1141743
Alignment:
Q  23 agcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaaca 122  Q
    |||||| |||||||||||| ||||||  ||||||||||| ||||| ||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  1141861 agcttgttgagtaggaaaaacactaatgaaaattaaatgcttgggggatggagggaaaatattagattaaaattagagtgaacaattgcttgaccaaaca 1141762  T
Q  123 agctttagtaagaaagata 141  Q
    |||||||||||||||||||    
T  1141761 agctttagtaagaaagata 1141743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 32208054 - 32208175
Alignment:
Q  213 aacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatattt 312  Q
    |||||||||||||   |||||||||||  ||| |||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||    
T  32208054 aacaagtgtcctacgtacattgtttaagaaaatcataaataaaaatatttttttaaaaacataagtcaaacatatgaaaaagtaataatcacacatattt 32208153  T
Q  313 ttatgcaaaagttactactatt 334  Q
     |||| ||||||||||||||||    
T  32208154 ctatgtaaaagttactactatt 32208175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 1529287 - 1529165
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaa-aattagggtgaacaatagcttgacc 117  Q
    |||||| |||||||||||||||| || |||| | |||||| || |||  |||||||| ||||| |||||||||| ||||||||| |  ||||||||||||    
T  1529287 acttagtttgatgagtaggaaaaacattaacgagaattaattgcttgtatgatggagggaaaaaattaggttaagaattagggttactaatagcttgacc 1529188  T
Q  118 aaacaagctttagtaagaaagat 140  Q
    |||||||||||||||||||||||    
T  1529187 aaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 15291530 - 15291460
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  15291530 atggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 29214729 - 29214835
Alignment:
Q  201 tagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    |||||| || |||| ||||||| |||| |||||||||||  ||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |    
T  29214729 tagggttttgctaaaaagtgtcttaaa-acattgtttaagaaaatcatagatagaaatattctcttgaaaacataagtcaaatatatgaaaaagtaatga 29214827  T
Q  301 tcacacat 308  Q
    ||| ||||    
T  29214828 tcatacat 29214835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 36924667 - 36924718
Alignment:
Q  290 aaaagtaataatcacacatatttttatgcaaaagttactactattgattgct 341  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  36924667 aaaaataataatcacacagatttttatgcaaaagttactactattgattgct 36924718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 15996392 - 15996450
Alignment:
Q  83 attaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    ||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||    
T  15996392 attaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagata 15996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 35044215 - 35044094
Alignment:
Q  210 actaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacata 309  Q
    ||||||||||| ||||| | ||||||||||  || |||| |  |||||| || |||| ||||| ||||||||||| |||  ||||||||||| ||||||     
T  35044215 actaacaagtgccctaagggcattgtttaagaaatccattataagaaattttatcttgaaaacctaagtcaaacacatgtgaaagtaataattacacatg 35044116  T
Q  310 tttttatgcaaaagttactact 331  Q
    ||| ||||||||||| ||||||    
T  35044115 tttctatgcaaaagtgactact 35044094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 36924482 - 36924412
Alignment:
Q  226 aagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaa 297  Q
    |||||||||||||| |||| ||||| || |||||||||||| ||||||||| |||||||||| |||||||||    
T  36924482 aagacattgtttaaggaaatcataa-taaaaatattctcttaaaaacataattcaaacatataaaaaagtaa 36924412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 42225960 - 42226048
Alignment:
Q  211 ctaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaata 299  Q
    ||||||||||||||||||||||||||||| ||| | || |  |||||| || |||| ||||||||| || |||||||  ||||||||||    
T  42225960 ctaacaagtgtcctaaagacattgtttaaggaatctattataagaaattttatcttgaaaacataaatctaacatatttaaaagtaata 42226048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 11582680 - 11582613
Alignment:
Q  34 taggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggt 101  Q
    |||||||| ||||||  | |||| ||||||||| ||| |||| |||||||||||||||||||||||||    
T  11582680 taggaaaaacactaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggt 11582613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 27214086 - 27213986
Alignment:
Q  200 atagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaata 299  Q
    ||||||||||  |||||||||| |||| |||||||||||| |||  || ||| |||||  || |||| |||| | |||||||||||||| |||||| |||    
T  27214086 atagggtcttgttaacaagtgttctaaggacattgtttaaggaacacacaaaaagaaactttgtcttaaaaatacaagtcaaacatatgtaaaagtcata 27213987  T
Q  300 a 300  Q
    |    
T  27213986 a 27213986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 46344709 - 46344777
Alignment:
Q  258 tattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagtta 326  Q
    ||||||||| |||| | |||||||| |||||||||| || |||  | ||||||||||||||||||||||    
T  46344709 tattctcttgaaaatacaagtcaaatatatgaaaaaatagtaagtatacatatttttatgcaaaagtta 46344777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 49235500 - 49235547
Alignment:
Q  93 aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    ||||||||| ||  ||||||||||||||||| ||||||||||||||||    
T  49235500 aattagggtaaatgatagcttgaccaaacaaactttagtaagaaagat 49235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 22910727 - 22910695
Alignment:
Q  290 aaaagtaataatcacacatatttttatgcaaaa 322  Q
    ||||||| |||||||||||||||||||||||||    
T  22910727 aaaagtagtaatcacacatatttttatgcaaaa 22910695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 879441 - 879579
Alignment:
Q  203 gggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatc 302  Q
    |||||||||||||||||||||||| | ||||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  879441 gggtcttactaacaagtgtcctaagggcattgtttaagcaaaccataaatagaaatattcttttgaaaacataagtcaaacatatgaaaaagtaataatc 879540  T
Q  303 acacatatttttatgcaaaagttactactattgattgct 341  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  879541 acacatatttctatgcaaaagttactattattgattgct 879579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 29280206 - 29280083
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||| || |||||| ||| ||||||||||||||||||||||||||||||||||||| | ||    
T  29280206 acttagcttgatgagtacgaaaagcactaacgaaaattacatgcttaggtgattgagggaaaatattaggttaaaattagggtgaacaatagcttcatca 29280107  T
Q  119 aacaagctttagtaagaaagatat 142  Q
     ||||| |||||||||||||||||    
T  29280106 gacaagttttagtaagaaagatat 29280083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 38996469 - 38996590
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaaca-atagcttgacc 117  Q
    ||||| ||||||||||||||||| |||||| || |||||||||||||  |||||||| ||||||||||||||||||||||||| |||| ||||||||| |    
T  38996469 acttaacttgatgagtaggaaaaacactaagcagaattaaatgtttgtttgatggagggaaaatattaggttaaaattagggt-aacatatagcttgatc 38996567  T
Q  118 aaacaagctttagtaagaaagat 140  Q
    | |||||||||||||||||||||    
T  38996568 agacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 38955790 - 38955910
Alignment:
Q  20 cttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaa 119  Q
    |||| |||| ||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||| | |||||| |||| ||     
T  38955790 cttaccttgctgagtaggaaaagcattaacaaaaattaaatgcttgggtgatggagggaaaatattaggttagaattagggttatcaatagtttgatcag 38955889  T
Q  120 acaagctttagtaagaaagat 140  Q
    | ||||||||||||| |||||    
T  38955890 ataagctttagtaagtaagat 38955910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 22625368 - 22625459
Alignment:
Q  51 aaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagatat 142  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||||||||   |||| ||||||||| ||||| |||||||||||||||||    
T  22625368 aaaattaaatgatggggtgatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagatat 22625459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 32281557 - 32281484
Alignment:
Q  69 gatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagatat 142  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||    
T  32281557 gatggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagatat 32281484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 6667532 - 6667462
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    |||||| ||||| |||||||||  |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  6667532 atggagggaaaa-attaggttaggattagggtaaacaatagcttgaccaaacaagctttagaaagaaagata 6667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 10601248 - 10601360
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    |||||| ||| |||||||||||| ||||||| ||||||||||| || |||||||| | ||||| |||| |||| ||||||| | |||||| ||||||| |    
T  10601248 acttagattgctgagtaggaaaa-cactaacaaaaattaaatgcttaggtgatgggg-gaaaagattatgttagaattaggttaaacaattgcttgacaa 10601345  T
Q  119 aacaagctttagtaa 133  Q
     ||||||||||||||    
T  10601346 gacaagctttagtaa 10601360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 28922428 - 28922486
Alignment:
Q  83 attaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    |||||||||| |||||||| |||||||||||||||| ||| ||||||||||| ||||||    
T  28922428 attaggttaagattagggtaaacaatagcttgaccagacatgctttagtaagtaagata 28922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 28926133 - 28926074
Alignment:
Q  83 attaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    |||||||||| ||||||||| |  ||||||||||||| ||||||||||||||||||||||    
T  28926133 attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 28125606 - 28125536
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||| |||||||||||| | ||||||||||     |||||||||||| |||||||||||||||||||||    
T  28125606 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 3636379 - 3636499
Alignment:
Q  211 ctaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatat 310  Q
    |||||||||| ||||| | |||||||||| ||| | || |  |||||| || |||| || |||||||||||||| ||| |||||||||||| ||| |  |    
T  3636379 ctaacaagtgccctaagggcattgtttaaggaatctattataagaaattttatcttgaacacataagtcaaacaaatgtaaaagtaataattacagaagt 3636478  T
Q  311 ttttatgcaaaagttactact 331  Q
    || || | |||||||||||||    
T  3636479 ttctaggtaaaagttactact 3636499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 341
Target Start/End: Complemental strand, 14812394 - 14812284
Alignment:
Q  231 attgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagttactac 330  Q
    ||||||||| ||||| | ||| |||||| || |||| |||| | |||||||||||||| |||||| ||||| |||||  |||  ||| |||||||| |||    
T  14812394 attgtttaaggaaacaacaaaaagaaattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagttaatac 14812295  T
Q  331 tattgattgct 341  Q
    | |||| ||||    
T  14812294 ttttgaatgct 14812284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 21922402 - 21922337
Alignment:
Q  72 ggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaa 137  Q
    |||| |||||||||||||||| |||||||| |   ||||||||| || ||||||||||| ||||||    
T  21922402 ggagggaaaatattaggttaagattagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 38402505 - 38402562
Alignment:
Q  201 tagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaat 258  Q
    ||||||||| |||||||||||| ||| | |||||||||| ||| ||||||| ||||||    
T  38402505 tagggtcttgctaacaagtgtcataagggcattgtttaaggaatccataaaaagaaat 38402562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 39491142 - 39491077
Alignment:
Q  206 tcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaa 271  Q
    |||| ||||||||||| ||||| | ||||||||| ||| ||||||| |||||| || |||||||||    
T  39491142 tcttgctaacaagtgttctaaaaatattgtttaaagaatccataaaaagaaatgttgtcttcaaaa 39491077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 9451363 - 9451245
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9451363 acttagcttgatgagtacgaaaagcactaacgaaaattaaatgcttgggtgatggagggaaaatattaggttaaaattagggtgaacaatagcttgacca 9451264  T
Q  119 aacaagctttagtaagaaa 137  Q
     ||||||||||||||||||    
T  9451263 gacaagctttagtaagaaa 9451245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 24257825 - 24257703
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaa-tgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacc 117  Q
    |||||| ||||||| |||||||||||| ||| | ||||||| || || ||||||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  24257825 acttagtttgatgattaggaaaagcaccaactacaattaaaatgcttaggtgatggaggaaaaatattaggttaaaattagggtgaacaattgcttgacc 24257726  T
Q  118 aaacaagctttagtaagaaagat 140  Q
    |||||||||||||||||||||||    
T  24257725 aaacaagctttagtaagaaagat 24257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 13597970 - 13597876
Alignment:
Q  232 ttgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagtta 326  Q
    |||||||| |||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||  |||||||||| |||||||||||||    
T  13597970 ttgtttaaagaaaccataaatcgaaatattctcttgaaaacacaaatcaaacatatgaaaaagtaataaatacacatatttctatgcaaaagtta 13597876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 27067995 - 27067874
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||||||||||||||||||||||||  | |||||||||  |   ||||  || ||||||||||| |||||||||||||  |  |||| |||||||    
T  27067995 acttagcttgatgagtaggaaaagcactaaggagaattaaatgcgtttatgatcaagggaaaatattagattaaaattagggtataggatagtttgacca 27067896  T
Q  119 aacaagctttagtaagaaagat 140  Q
    ||||||||||||||||||||||    
T  27067895 aacaagctttagtaagaaagat 27067874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 6898759 - 6898824
Alignment:
Q  77 gaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagatat 142  Q
    |||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  6898759 gaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagatat 6898824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  71 tggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    ||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 37780411 - 37780296
Alignment:
Q  213 aacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatattt 312  Q
    |||||||||  |||| | ||||||||| |||| |||||||||||| ||||  || |||||| ||||||||||||| |||||   ||||   |||||||||    
T  37780411 aacaagtgttttaaaaaaattgtttaaagaaatcataaatagaaacattcctttaaaaacacaagtcaaacatataaaaaa---ataaatgcacatattt 37780315  T
Q  313 ttatgcaaaagttactact 331  Q
    ||| |||||||||||||||    
T  37780314 ttaagcaaaagttactact 37780296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 9093730 - 9093647
Alignment:
Q  201 tagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaaca 284  Q
    |||||||||  ||||||||||||||| |||||||||||| ||| ||||||| |||||| ||  ||| |||| ||||||||||||    
T  9093730 tagggtcttgttaacaagtgtcctaaggacattgtttaaggaacccataaaaagaaattttgccttgaaaatataagtcaaaca 9093647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 33755855 - 33755899
Alignment:
Q  295 taataatcacacatatttttatgcaaaagttactactattgattg 339  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  33755855 taataatcacacatatttttatgcaaaagttaccactaatgattg 33755899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 10427605 - 10427719
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagct 126  Q
    |||||| |||||||| ||||||  | |||| |||| |||| |||||||| |||| ||||||||||||||||||||     || |||||||||||||| ||    
T  10427605 tgatgattaggaaaaacactaagaagaatttaatgcttggatgatggagggaaa-tattaggttaaaattagggtatgatattgcttgaccaaacaacct 10427703  T
Q  127 ttagtaagaaagatat 142  Q
    ||| ||| ||||||||    
T  10427704 ttaataaaaaagatat 10427719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 43361927 - 43361816
Alignment:
Q  211 ctaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatat 310  Q
    ||||||||||||||||  ||||||||||| ||| |||| || |||||  || |||| |||||||||||||||||  |  |||||||||| | ||||| ||    
T  43361927 ctaacaagtgtcctaagaacattgtttaaggaatccattaaaagaaactttatcttaaaaacataagtcaaacacgtttaaaagtaatacttacacaaat 43361828  T
Q  311 ttttatgcaaaa 322  Q
    || |||| ||||    
T  43361827 ttctatgtaaaa 43361816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 7810116 - 7810064
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaa 123  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||||||||||    
T  7810116 atggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaacaa 7810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 9199863 - 9199750
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagct 126  Q
    |||||| ||||||||| |||||  | |||| |||| |||| |||||||| |||||||||||||||| | | || |     || ||||||||| |||||||    
T  9199863 tgatgattaggaaaagaactaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagct 9199764  T
Q  127 ttagtaagaaagat 140  Q
    ||||||||||||||    
T  9199763 ttagtaagaaagat 9199750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 10098062 - 10097970
Alignment:
Q  208 ttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    |||||||||||||||||||| | ||||||||| ||| ||| ||| |||||| || |||| |||| ||||| |||| | ||| |||||| ||||    
T  10098062 ttactaacaagtgtcctaaaaatattgtttaaggaatccacaaagagaaattttgtcttgaaaatataaggcaaatacatgtaaaagtcataa 10097970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 9201402 - 9201332
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaatta 97  Q
    |||||| ||||||||| |||||  | |||| |||| |||| |||||| | |||||||||||||||||||||    
T  9201402 tgatgattaggaaaagaactaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 4883591 - 4883656
Alignment:
Q  77 gaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagatat 142  Q
    |||||| ||||||||   ||||||| |  |||||||||||| |||||||||||||||| |||||||    
T  4883591 gaaaatgttaggttagttttagggttaggaatagcttgacctaacaagctttagtaagtaagatat 4883656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 50783639 - 50783562
Alignment:
Q  254 gaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagttactact 331  Q
    ||||| || |||| ||||||| ||||||||| ||| |||||||||||| |||||  ||| |||  |||||||||||||    
T  50783639 gaaattttatcttgaaaacattagtcaaacacatgtaaaagtaataattacacaagtttctatataaaagttactact 50783562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 4512794 - 4512870
Alignment:
Q  224 taaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    |||||||| |||||||  || ||| ||| |||||| || |||| ||||||||||||||||| ||| |||||| ||||    
T  4512794 taaagacaatgtttaagaaatccacaaaaagaaattttgtcttaaaaacataagtcaaacacatgtaaaagttataa 4512870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16530226 - 16530270
Alignment:
Q  263 tcttcaaaacataagtcaaacatatgaaaaagtaataatcacaca 307  Q
    |||| |||| |||||||||||||||| |||||||||||| |||||    
T  16530226 tcttgaaaatataagtcaaacatatgtaaaagtaataattacaca 16530270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 826682 - 826807
Alignment:
Q  20 cttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaa 119  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  826682 cttaggttgatgagtaggaaaagcactaacgaaaattaaatgattgggcgatggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccag 826781  T
Q  120 acaagctttagtaagaaagatatgtt 145  Q
    ||||| ||||||||||||||| ||||    
T  826782 acaagttttagtaagaaagatgtgtt 826807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 21762143 - 21762022
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||    
T  21762143 acttagcttgatgagtaggaaaagcactaacgaaaattaaataattgggtgatggagggaaaatagtaggttaaaattagggtgagcaatagcttgatca 21762044  T
Q  119 aacaagctttagtaagaaagat 140  Q
     ||||| |||||||||||||||    
T  21762043 gacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 30836430 - 30836548
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    |||||||||| |||||||| |||||||| |  ||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||| |||||| ||    
T  30836430 acttagcttgctgagtagggaaagcactcatgaaaattaaatgcttgggggatggagggaaaatattagattaaaattagggtgaacaattgcttgatca 30836529  T
Q  119 aacaagctttagtaagaaa 137  Q
     ||||||||||||||||||    
T  30836530 gacaagctttagtaagaaa 30836548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 31442630 - 31442515
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagct 126  Q
    |||||| ||||||||||||| |  | |||| |||| |||| |||||||| |||||||||||||||||||||||||     || |||||||||||||||||    
T  31442630 tgatgattaggaaaagcacttaggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagct 31442531  T
Q  127 ttagtaagaaagatat 142  Q
    ||||||||||||||||    
T  31442530 ttagtaagaaagatat 31442515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  71 tggagagaaaatattaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    ||||| |||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 15296215 - 15296147
Alignment:
Q  71 tggagagaaaatattaggttaaaa-ttagggtgaacaatagcttgaccaaacaagctttagtaagaaag 138  Q
    ||||| |||||||||||||||||| ||||||| |   |||||||||| |||||||||||||||||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  53 aattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaaca-atagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||| |||| |||| |||||||| ||||||||||||||||||||| ||| | || || |||||| || |||||||||||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggt-atcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 30438154 - 30438095
Alignment:
Q  243 aaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatca 303  Q
    ||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||||||||||    
T  30438154 aaccataaaaagaaatattttcttgaaa-cataaatcaaacatatgaaaaagtaataatca 30438095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 26840470 - 26840415
Alignment:
Q  85 taggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||||| |||||||| ||  || ||||||||||||||||||||| |||||||||    
T  26840470 taggttaagattagggttaatgatggcttgaccaaacaagctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 7867948 - 7868018
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||| |||||||||||| | ||||||||||     |||||||||||| | |||||||||||||||||||    
T  7867948 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 7984547 - 7984636
Alignment:
Q  211 ctaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    ||||||||||| || | |||||||||||||||| ||| ||| |||||  || |||| |||| | |||||||||| ||| |||||| ||||    
T  7984547 ctaacaagtgttctgaggacattgtttaatgaacccacaaaaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtcataa 7984636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 40018 - 40114
Alignment:
Q  204 ggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    |||||| |||||||||| ||||| |||||||||||| ||| ||| | | |||||| || |||| |||| | || ||||||| ||| |||||| ||||    
T  40018 ggtcttgctaacaagtgccctaaggacattgtttaaggaacccacataaagaaattttgtcttgaaaatacaaatcaaacacatgtaaaagtcataa 40114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 42192956 - 42192829
Alignment:
Q  212 taacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatt 311  Q
    |||||| ||||||||||| ||| ||||| ||||  ||||||| ||||||| |||| |||| |||||||||| ||||||||||||||||||||| ||||||    
T  42192956 taacaaatgtcctaaagatattatttaaagaaataataaatataaatattttcttgaaaatataagtcaaatatatgaaaaagtaataatcactcatatt 42192857  T
Q  312 tttatgcaaaagttactactattgattg 339  Q
    ||||||||||||||||||||||||||||    
T  42192856 tttatgcaaaagttactactattgattg 42192829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 3193126 - 3193244
Alignment:
Q  21 ttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaa 120  Q
    |||||||| ||||||||||||||||| |  |||||||||||||||||  |||||| ||||||||||||||||||||| | |||| |||  |||||||| |    
T  3193126 ttagcttgctgagtaggaaaagcactcatgaaaattaaatgtttggga-atggagggaaaatattaggttaaaattaagatgaataattacttgaccaga 3193224  T
Q  121 caagctttagtaagaaagat 140  Q
    ||||||||||||||||||||    
T  3193225 caagctttagtaagaaagat 3193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 26084016 - 26083903
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagct 126  Q
    |||||| |||||||||||||||  | |||| |||| || | |||||||| |||||||||||||||||||||||||     || ||||||||| |||||||    
T  26084016 tgatgattaggaaaagcactaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagct 26083917  T
Q  127 ttagtaagaaagat 140  Q
    ||||||||||||||    
T  26083916 ttagtaagaaagat 26083903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 42315412 - 42315340
Alignment:
Q  71 tggagagaaaatattaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagatat 142  Q
    ||||| |||||||||||||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagatat 42315340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 26981147 - 26981034
Alignment:
Q  28 gatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctt 127  Q
    ||||| |||||||| ||||||  | |||| |||| |||| ||||||||  ||||||||||||||||||||||||     || |||||| |||||||||||    
T  26981147 gatgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctt 26981048  T
Q  128 tagtaagaaagata 141  Q
    ||||||||||||||    
T  26981047 tagtaagaaagata 26981034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 23828413 - 23828343
Alignment:
Q  71 tggagagaaaatattaggttaaaa-ttagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    ||||| |||||||||||||||||| ||||||| |  ||||||||||||||||||||| |||||||||||||    
T  23828413 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 105502 - 105426
Alignment:
Q  255 aaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagttactact 331  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||  ||||||| || | ||||||| ||||||||    
T  105502 aaatattctcttgaaaacacaagtcaaacatatgaaaaaataataaatacacatacttctttgcaaaaattactact 105426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 45244285 - 45244356
Alignment:
Q  71 tggagagaaaatattaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    ||||| |||||||||||||||| ||||||||| |  ||||||||||||| |||| |||||||||||||||||    
T  45244285 tggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagata 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 4966502 - 4966440
Alignment:
Q  79 aaatattaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||||||||| | ||||||||| |||||||||||||||| |||||||||| |||| |||||    
T  4966502 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttaataagtaagat 4966440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 5334386 - 5334312
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggt 101  Q
    |||||| ||||||||||| |||  | |||| |||| |||| |||||||| |||||| ||||||||||||||||||    
T  5334386 tgatgattaggaaaagcattaaagagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggt 5334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 9888957 - 9889019
Alignment:
Q  79 aaatattaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||||||||| | ||||||||| |||||||||||||||| |||||||||| |||| |||||    
T  9888957 aaatattaggtttagaattagggtaaacaatagcttgaccagacaagctttaataagtaagat 9889019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 7496804 - 7496757
Alignment:
Q  94 attagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    |||||||| | | ||||||||| |||||||||||||||||||||||||    
T  7496804 attagggtcagctatagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 27134686 - 27134652
Alignment:
Q  205 gtcttactaacaagtgtcctaaagacattgtttaa 239  Q
    ||||| |||||||||||||||||||||||||||||    
T  27134686 gtcttgctaacaagtgtcctaaagacattgtttaa 27134652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 13018457 - 13018540
Alignment:
Q  202 agggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatat-tctcttcaaaacataagtcaaacat 285  Q
    ||||||||  ||||||||||||||| | |||||||||| ||| ||||||| ||||| || | |||| |||| |||||||||||||    
T  13018457 agggtcttgttaacaagtgtcctaagggcattgtttaaggaacccataaa-agaaaaatatatcttgaaaatataagtcaaacat 13018540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 22964127 - 22964007
Alignment:
Q  20 cttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaa 119  Q
    |||| |||| |||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||| ||||||||| | ||||||||||||||     
T  22964127 cttaccttgctgagtaggaaaagcactaacaaaaattaaatgcttggttgatggagggaaaatattaggttagaattagggttaccaatagcttgaccag 22964028  T
Q  120 acaagctttagtaagaaagat 140  Q
    ||||||||||||||| |||||    
T  22964027 acaagctttagtaagtaagat 22964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 11900202 - 11900105
Alignment:
Q  242 aaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagttactactattgattgct 341  Q
    |||||||||||| ||||||| |||| ||||||||  | |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||    
T  11900202 aaaccataaataaaaatattttcttgaaaacata--taaaacatatgaaaaaataataatcacacatatttctatgcaaaagttactaatattgattgct 11900105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 3908796 - 3908888
Alignment:
Q  37 gaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagcttta 129  Q
    |||||| |||||| |||||||||||||||| ||||| || ||||||| ||||||||||||||||| | ||||||||||| || ||||||||||    
T  3908796 gaaaagtactaacgaaaattaaatgtttggatgatgaagggaaaatagtaggttaaaattagggttaccaatagcttgatcagacaagcttta 3908888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 15700792 - 15700721
Alignment:
Q  69 gatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||    
T  15700792 gatggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 43325497 - 43325438
Alignment:
Q  233 tgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaa 293  Q
    ||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  43325497 tgtttaaggaaaccataaataaaaatattctcttgaaaacat-agtcaaacatatgaaaaa 43325438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 46555590 - 46555501
Alignment:
Q  53 aattaaatgtttgggtgatggagagaaaatattaggttaa-aattagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    |||||||||||||  |  ||||| |||||||||||||||| ||||||||| |  ||||||||||||  |||||||||||||| |||||||    
T  46555590 aattaaatgtttgattagtggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagata 46555501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 38737368 - 38737300
Alignment:
Q  263 tcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagttactact 331  Q
    |||| ||||||||||||||||| ||| ||||||| |||| |||||| ||||||| ||||||||| ||||    
T  38737368 tcttgaaaacataagtcaaacacatgtaaaagtagtaattacacatgtttttatacaaaagttattact 38737300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 50746568 - 50746512
Alignment:
Q  230 cattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacata 286  Q
    |||||||||| |||| ||||||||||||| || |||| |||||||||||||||||||    
T  50746568 cattgtttaaggaaatcataaatagaaatgttttcttgaaaacataagtcaaacata 50746512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 11818132 - 11818228
Alignment:
Q  204 ggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    ||||||||||||||||   |||||| |||||||||| ||| ||||||| |||||| || |||| |||| | |||||||| | ||| |||||| ||||    
T  11818132 ggtcttactaacaagtactctaaaggcattgtttaaagaacccataaaaagaaatcttgtcttgaaaatacaagtcaaaaacatgtaaaagtcataa 11818228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 32815319 - 32815219
Alignment:
Q  201 tagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    |||||||||||||| |||||   |||| ||||||||||| |||  || ||| ||| || || |||| |||| | |||||||||||||| |||||||||||    
T  32815319 tagggtcttactaataagtgctttaaaaacattgtttaaagaactcacaaaaagatattttatcttaaaaatacaagtcaaacatatgtaaaagtaataa 32815220  T
Q  301 t 301  Q
    |    
T  32815219 t 32815219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 30401004 - 30400953
Alignment:
Q  290 aaaagtaataatcacacatatttttatgcaaaagttactactattgattgct 341  Q
    |||||||||||||||| |||||| ||| |||||||||||| ||| |||||||    
T  30401004 aaaagtaataatcacatatatttctatacaaaagttactattatagattgct 30400953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 30407561 - 30407510
Alignment:
Q  290 aaaagtaataatcacacatatttttatgcaaaagttactactattgattgct 341  Q
    |||||||||||||||| |||||| ||| |||||||||||| ||| |||||||    
T  30407561 aaaagtaataatcacatatatttctatacaaaagttactattatagattgct 30407510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 9301105 - 9301047
Alignment:
Q  268 aaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagtta 326  Q
    ||||||||||||||||| ||| |||||||||||| |||||  |||||||  ||||||||    
T  9301105 aaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtta 9301047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 50745295 - 50745241
Alignment:
Q  285 tatgaaaaagtaataatcacacatatttttatgcaaaagttactactattgattg 339  Q
    ||||||||||||| ||| || ||||||| |||||||||| ||||| |||||||||    
T  50745295 tatgaaaaagtaacaatgacgcatatttctatgcaaaagctactattattgattg 50745241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 3306733 - 3306770
Alignment:
Q  202 agggtcttactaacaagtgtcctaaagacattgtttaa 239  Q
    |||||| | |||||||||||||||||||||||||||||    
T  3306733 agggtcatgctaacaagtgtcctaaagacattgtttaa 3306770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 24819232 - 24819183
Alignment:
Q  91 aaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    ||||||||||| |  ||||||||||||||||||||||| ||||| |||||    
T  24819232 aaaattagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 30401069 - 30401010
Alignment:
Q  201 tagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatatt 261  Q
    ||||||||| ||| |||||| | ||| |||||||||||| ||| |||||||||||||||||    
T  30401069 tagggtcttgctatcaagtgccataaggacattgtttaaggaa-ccataaatagaaatatt 30401010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 30407626 - 30407567
Alignment:
Q  201 tagggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatatt 261  Q
    ||||||||| ||| |||||| | ||| |||||||||||| ||| |||||||||||||||||    
T  30407626 tagggtcttgctatcaagtgccataaggacattgtttaaggaa-ccataaatagaaatatt 30407567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 31981913 - 31981793
Alignment:
Q  19 acttagcttgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgacca 118  Q
    |||||||||| ||||||||||||||||| |  ||||||||||| ||| | |||| || ||||||||||||||||||||||| |||||||| |||||| ||    
T  31981913 acttagcttgctgagtaggaaaagcactcatgaaaattaaatgcttgag-gatgtagggaaaatattaggttaaaattaggttgaacaattgcttgatca 31981815  T
Q  119 aacaagctttagtaagaaagat 140  Q
    ||||||||||||||| ||||||    
T  31981814 aacaagctttagtaaaaaagat 31981793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 36308190 - 36308299
Alignment:
Q  219 tgtcctaaagacattgtttaatgaaaccataaatagaaa-tattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatg 317  Q
    |||||||| |||||||| ||| ||||||||||| | ||| || ||| || |||||| ||  ||||||||||||||||||||||  ||||||||||| |||    
T  36308190 tgtcctaaggacattgtctaaggaaaccataaacaaaaaatactcttttaaaaacacaaaccaaacatatgaaaaagtaataaatacacatattttaatg 36308289  T
Q  318 caaaagttac 327  Q
    ||||||||||    
T  36308290 caaaagttac 36308299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 9045236 - 9045162
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggt 101  Q
    |||||| |||||||||||||||  | |||| ||||||| | |||||||| |||||||||||||||||||||||||    
T  9045236 tgatgattaggaaaagcactaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggt 9045162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  71 tggagagaaaatattaggttaaaa-ttagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    ||||| |||||||||||||||||| ||||||| |   ||||||||||||||||||||||||||||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 32839774 - 32839856
Alignment:
Q  255 aaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagttactactattgattgct 341  Q
    |||||||  ||| ||||||||||| |||||||| |||||     ||||||||||||||||||||||||||||||| |||||||||||    
T  32839774 aaatattaccttaaaaacataagttaaacatataaaaaaa----aatcacacatatttttatgcaaaagttactattattgattgct 32839856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  71 tggagagaaaatattaggttaaaa-ttagggtgaacaatagcttgaccaaacaagctttagtaagaaagata 141  Q
    ||||| |||||||||||||||||| ||||||| |   |||||||||||||||||| ||||||||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 22780060 - 22780128
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaaga 139  Q
    |||||| ||||| |||||||||| |||||||| ||||||||||||| || ||||||||||| ||||||||    
T  22780060 atggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 11300764 - 11300836
Alignment:
Q  71 tggagagaaaatattaggttaaaa-ttagggtgaacaatagcttgaccaaacaagctttagtaagaaagatat 142  Q
    ||||| |||||||||||||||||| ||||||| |   ||||||| |||| ||||| |||||||||||||||||    
T  11300764 tggagggaaaatattaggttaaaaattagggttacttatagcttcaccagacaagttttagtaagaaagatat 11300836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 14156970 - 14157017
Alignment:
Q  211 ctaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaat 258  Q
    |||||||||||||||||||||||| |||||||| || | |||||||||    
T  14156970 ctaacaagtgtcctaaagacattgattaatgaatcctttaatagaaat 14157017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 34338875 - 34338956
Alignment:
Q  203 gggtcttactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaaca 284  Q
    |||||||  ||||||||| ||||| |||||||||||| ||| ||||||| ||||||  |  ||| |||| ||||||||||||    
T  34338875 gggtcttgttaacaagtgccctaaggacattgtttaaagaacccataaaaagaaattatgccttgaaaatataagtcaaaca 34338956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 9639275 - 9639369
Alignment:
Q  232 ttgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacatatttttatgcaaaagtta 326  Q
    |||||||| |||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||  |||||||||| |||||||||||||    
T  9639275 ttgtttaaagaaaccataaatcgaaatattctcttgaaaacacaaatcaaacatatgaaaaagtaataaatacacatatttctatgcaaaagtta 9639369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 20077299 - 20077412
Alignment:
Q  27 tgatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagct 126  Q
    |||||| |||||||||||||||    |||| |||| |||| |||||||| |||||||||||||||||||||||||     || |||||||||||||||||    
T  20077299 tgatgattaggaaaagcactaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagct 20077398  T
Q  127 ttagtaagaaagat 140  Q
    ||||||||||||||    
T  20077399 ttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 6253470 - 6253382
Alignment:
Q  51 aaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaaga 139  Q
    |||||||||||||| |||||||||| |||||  |||||||| ||||||| | |||||| ||||||  ||||||||||||||||||||||    
T  6253470 aaaattaaatgtttaggtgatggagggaaaaatttaggttagaattaggttaaacaattgcttgattaaacaagctttagtaagaaaga 6253382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 39742301 - 39742364
Alignment:
Q  77 gaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||    
T  39742301 gaaaatattaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 4407889 - 4407816
Alignment:
Q  28 gatgagtaggaaaagcactaaccaaaattaaatgtttgggtgatggagagaaaatattaggttaaaattagggt 101  Q
    ||||| |||||||| ||||||  | |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  4407889 gatgattaggaaaaacactaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggt 4407816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 47992413 - 47992483
Alignment:
Q  230 cattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataa 300  Q
    |||||||||| |||| |||||||| ||||||||| || ||||||||||| ||| |||||||||||||||||    
T  47992413 cattgtttaaggaaatcataaatataaatattcttttgaaaacataagttaaatatatgaaaaagtaataa 47992483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 48850795 - 48850726
Alignment:
Q  70 atggagagaaaatattaggttaaaattagggtgaacaatagcttgaccaaacaagctttagtaagaaagat 140  Q
    |||||| ||||| |||||||||| |||||||| ||||||||||||| || ||||||||||| |||||||||    
T  48850795 atggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 46515459 - 46515527
Alignment:
Q  216 aagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaaca 284  Q
    ||||||||||| |||||||||||| |||  |||||| ||||||||| | || |||| | ||||||||||    
T  46515459 aagtgtcctaaggacattgtttaaagaactcataaaaagaaatattattttaaaaatacaagtcaaaca 46515527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 19410 - 19523
Alignment:
Q  209 tactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataatcacacat 308  Q
    |||||||||||||||||| |||||||||||| ||  |||     |||||| || |||| ||||||||||||||||| ||| |||||||||||| |||||     
T  19410 tactaacaagtgtcctaaggacattgtttaaggattccactccaagaaattttatcttgaaaacataagtcaaacacatgtaaaagtaataattacacaa 19509  T
Q  309 atttttatgcaaaa 322  Q
     ||||||| |||||    
T  19510 gtttttatacaaaa 19523  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 49204 - 49112
Alignment:
Q  209 tactaacaagtgtcctaaagacattgtttaatgaaaccataaatagaaatattctcttcaaaacataagtcaaacatatgaaaaagtaataat 301  Q
    ||||| ||||||  |||||| |||||||||| ||| |||| |  |||||| || |||| ||||||||||||||| | ||| ||||||||||||    
T  49204 tactagcaagtgctctaaaggcattgtttaaggaatccattataagaaatgttatcttaaaaacataagtcaaatacatgtaaaagtaataat 49112  T

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