View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_high_4 (Length: 425)
Name: NF6762_high_4
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 51 - 409
Target Start/End: Complemental strand, 45064160 - 45063800
Alignment:
| Q |
51 |
attacaaatcataaaaccttgctagtgctggtaaatatgcatactattaagttttatttgatctgatatgagttctaagtttctgttccaaatgaaaggt |
150 |
Q |
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| T |
45064160 |
attacaaatcataaaaccttgctagtgctgctaaatatgcatactat-aagttttatttgatctgatatgagttctaagtttctgttccaaatgaaaggt |
45064062 |
T |
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| Q |
151 |
caaagaatctctagagcagacacataagtattatgcctcgtatggaaatgattttacaataaatgctcaggtgataatgtttcttctatccttagaattc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45064061 |
caaagaatctctagagcagacacataagtattatgcctcgtatggaaatgattttacaataaatgctcaggtgataatgtttcttctatccttagaattc |
45063962 |
T |
|
| Q |
251 |
tgattaattttcctttccctaaca---ctttttattaggatgataattagtttgatcacaattacttatttcaagctattggtttaattgtgcacaattt |
347 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063961 |
tgattaattttcctttccctaacacttctttttattaggatgataattagtttgatcacaattacttatttcaagctattggtttaattgtgcacaattt |
45063862 |
T |
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| Q |
348 |
acaaaggcgtctggagcatatattttccgccctaatggttcatcaattcccatcaactccaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063861 |
acaaaggcgtctggagcatatattttccgccctaatggttcatcaattcccatcaactccaa |
45063800 |
T |
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