View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_low_1 (Length: 1009)
Name: NF6762_low_1
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Original strand, 13347687 - 13348351
Alignment:
| Q |
1 |
agaataaatattactccattagcaaaaaatagtaatgctagcaaaaatctctattttggatttaaattccctgcatttgggaatcctaaaattcctgtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
13347687 |
agaataaatattactccattagcaaaaaatagtaatgctagcaaaaatctctattttggatttaaattccctgcatttggaaatcctaaaattccggtat |
13347786 |
T |
|
| Q |
101 |
tagtgctttttggaccatctgactgaacagttcacatttcaagcaagtactttctatctgattaaccctctcttgcaaccctcattattttggtgaca-- |
198 |
Q |
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| T |
13347787 |
tagtgctttttggaccatctgactgaacagttcacatttcaagcaagtaatttctatttgattaaccctctcttgcaaccctcattgttttggtgacaca |
13347886 |
T |
|
| Q |
199 |
--------------caagtaatttctatcaccatgattgtcggtgactaaaacacgatgcgagaaatcacaatgattgtcggtgactaaactagcataca |
284 |
Q |
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| T |
13347887 |
agcattgtgggacacaagtaatttctatcacaacgattgtcggtggctaaaacatgatgtgagaaatcacaatgattgttggtgactaaactagcataca |
13347986 |
T |
|
| Q |
285 |
catatggtgtagataactttttaagtaacatctaatggaatcactctatttctctacgttatacaaattttttgaaatgcaattacaaaagtgaaatgat |
384 |
Q |
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| T |
13347987 |
catatggtgtagataactttttaagtaacatctaatggaattactctatttctctatgttatacaaattttttgaaatgcaattacaaaagtgaaaagat |
13348086 |
T |
|
| Q |
385 |
atcgcaaaatattgaactttaatcggattttcattgagcaaacaaacagattacagaaaaggaaaaacgatagaacaataaaagaacacctgaaatttag |
484 |
Q |
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| T |
13348087 |
atagcaaaatattgaactttaatcggattttcattgagcaggtaaacagattacagaaaaggaaaaacga-agaacaataaaagaacacctgaaatttag |
13348185 |
T |
|
| Q |
485 |
tattagaggggcgatcaccaatcctccaaaaatatctccatttaagatcagcaccaacaggaacatgaggtcgatgttcttcaggcatttctttcacttt |
584 |
Q |
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| T |
13348186 |
tattagaggggcgatcaccaatcctccaaaaatatctccatttaagatcagcaccaacaggaacatgaggtcgatgttcttcaggcatttctttcacttt |
13348285 |
T |
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| Q |
585 |
ctcttgcatttcttcatccaccaaacttctcggcacttccactctctccggcgtaaccccaaccta |
650 |
Q |
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| T |
13348286 |
ctcttgcatttcttcatccaccaaacttctcggtacttccactctctccggcgtaaccccaaccta |
13348351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 649 - 972
Target Start/End: Original strand, 13348534 - 13348857
Alignment:
| Q |
649 |
tatacattatacagtaattaaactctaatttcaatttaaactagtaaataagtgaaacgattaatgaacctggtaatgcaaatgaggtctctcttggcga |
748 |
Q |
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| T |
13348534 |
tatacattatacagtaattaaactctaatttcaatttaaactagtaaataagtgaaacgattaatgaacctggtaatgcaaatgaggtctctcttgacga |
13348633 |
T |
|
| Q |
749 |
atcttgaagtcatgaggagctgagaagtagttttccatcatatcaatgaaacgatcattatcttcgacggtgcatcgtggatcttttacaagaagtgctc |
848 |
Q |
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| T |
13348634 |
atcttgaactcatgaggagctgagaagtagttttccatcatatcaatgaaacgatcattatcttcgacagtgcatcgcggatcttttacaagaagtgctc |
13348733 |
T |
|
| Q |
849 |
cagtttcacttaaggtgcggctgacatcggcgcatagggattgaaggcgtggatcgcggtcgtttgaaacggcggagaggtatgaagatagatctatcac |
948 |
Q |
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| T |
13348734 |
cagtttcacttaaggtgcggctgacatcggcgcatagggattgaaggcgtggatcgcggtcgtttgaaacggcggagaggtatgaagatagatctatcac |
13348833 |
T |
|
| Q |
949 |
tggtagttccattgttagtgatgg |
972 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
13348834 |
tggtagttccattgttagtgatgg |
13348857 |
T |
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Back To:
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