View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_low_12 (Length: 250)
Name: NF6762_low_12
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40127573 - 40127346
Alignment:
| Q |
1 |
cctggacccataatgacaaagtggcatgcattatctatccggaggatgcatccagacctgggccaatcaacgagagagagcgattagcccaagtcgtgga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40127573 |
cctggacccataatgacaaagtggtatgcattatctatccggaggatgcatccagacctggcccaatcaacgagagagagcgattagcccaagtcgtgga |
40127474 |
T |
|
| Q |
101 |
tcagatccggaatgtgatagaggccaatgaaggaaagggagagaaagatatgaggagtgtggtgttaaaaagctctaccaccgggcacagtcataccgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
40127473 |
tcagatccggaatgtgatagaggccaatgaaggaaagggagataaagatatgaggagtgtggtgttaaaaagctccaccaccgggcacagtcatactgaa |
40127374 |
T |
|
| Q |
201 |
cggaggctccaccagatgatgtacgcag |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
40127373 |
cggaggctccaccagatgatgtacgcag |
40127346 |
T |
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