View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_low_5 (Length: 410)
Name: NF6762_low_5
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 38869222 - 38869630
Alignment:
| Q |
1 |
cccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagccattataa |
100 |
Q |
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| T |
38869222 |
cccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagccattataa |
38869321 |
T |
|
| Q |
101 |
aaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgtacttagc |
200 |
Q |
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| T |
38869322 |
aaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgtacttagc |
38869421 |
T |
|
| Q |
201 |
attcaaattcgttcttatcatttaaaatcacaatgcagaaacgtcattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaatgagaagat |
300 |
Q |
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| T |
38869422 |
attcaaattcgttcttatcatttaaaatcataatgcagaaacg-cattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaacgagaagat |
38869520 |
T |
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| Q |
301 |
agacaacattcaatggaaaataattttag-------aaagnnnnnnnnnngagagagaaaatactgaagttttggacgtcttccataatcttcctgatgt |
393 |
Q |
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| T |
38869521 |
agacaacattcaatggaaaataattttagaaaaaaaaaaaaaaaaaaaaagagagagaaaatactgaagttttggacgtcttccataatcttcctgatgt |
38869620 |
T |
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| Q |
394 |
ccatctcatt |
403 |
Q |
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| T |
38869621 |
ccatttcatt |
38869630 |
T |
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