View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_low_7 (Length: 337)
Name: NF6762_low_7
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 29356191 - 29356433
Alignment:
| Q |
14 |
acatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaacaaa |
113 |
Q |
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| T |
29356191 |
acatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaacaaa |
29356290 |
T |
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| Q |
114 |
ttacaattgataagaccgagctagcgtttcaagggtaatcttgtaagctaaaccgcagtatttaaccctaaccttgaatagtaggcatgcaaccactcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29356291 |
ttacaattgataagaccgagctagcgtttcaagggtaatcttgtaagctaaaccgcagtatttaaccctaaccttgaatagtaggcatgcaaccactcta |
29356390 |
T |
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| Q |
214 |
tagtcggagacatgggcacaattgaccgaaatctattatcaaa |
256 |
Q |
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| T |
29356391 |
tagtcggagacgtggacacaattgaccgaaatctattatcaaa |
29356433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 29362857 - 29362969
Alignment:
| Q |
14 |
acatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaagaaaactaacaaa |
113 |
Q |
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|||||||||| ||||||||||||| |||| || || || |||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
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| T |
29362857 |
acatcattccgtcatgacctgtttccctttctcgttcagtaagacaccgtcttcttcaagacagcatccagacaacgatgaaggtaagataactaacaaa |
29362956 |
T |
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| Q |
114 |
ttacaattgataa |
126 |
Q |
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| T |
29362957 |
ttgcaatagataa |
29362969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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