View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6762_low_8 (Length: 329)
Name: NF6762_low_8
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 55084025 - 55084313
Alignment:
| Q |
23 |
tagaattcaacttagagtacctgaatatggatggactacgcagaaaatctttcatctcatgaatttcattctcaacggaggtatactatacaaattacaa |
122 |
Q |
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| T |
55084025 |
tagaattcaacttagagtacctgaatatggatggactacgcagaaaatctttcatctcatgaatttcattctcaacggaggtatactatacaaattacaa |
55084124 |
T |
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| Q |
123 |
tcctccttatttatattattatatgcttgtttcaccattctcattttcatattttaatattgcttgctttcagtgcgtgctctggtttttggattgcaca |
222 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55084125 |
tcctccttatttatatt---atatgcttgtttcaccattctcattttcatattttaatattgcttgctttcagtgcgtgctctggttttcggattgcaca |
55084221 |
T |
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| Q |
223 |
ccctactttttctttttcatcctaaggttaattcattcattttgcatgctatgcaacccaccctcatattaatttaatttgactattatcat |
314 |
Q |
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| T |
55084222 |
ccctactttttctttttcatcctaaggttaattcattcattttgcatgctatgcaacccaccctcatattaatttaatttgactattatcat |
55084313 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 7963018 - 7963074
Alignment:
| Q |
24 |
agaattcaacttagagtacctgaatatggatggactacgcagaaaatctttcatctc |
80 |
Q |
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|||||| ||||||||||||||||||| || |||||||| ||||| || || |||||| |
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| T |
7963018 |
agaattgaacttagagtacctgaatacggttggactactcagaagattttccatctc |
7963074 |
T |
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