View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6762_low_9 (Length: 292)
Name: NF6762_low_9
Description: NF6762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6762_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 49009443 - 49009690
Alignment:
| Q |
7 |
attacaaccttcttcaactctcttttggcatcattagatatttctcaatataatggtgtaactgatcccaccaagaaagaaaagccagaaagagagaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49009443 |
attacaaccttcttcaactctcttttggcatcattagatatttctcaatataatgg-------------------aaagaaaagccagaaagagagaaat |
49009523 |
T |
|
| Q |
107 |
catgatttgctaaatgacatgcacaacaattttcttctctacatatacagaaatagatgtcccttgttaaacatatgcaattttgcctcctgcttctggg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
49009524 |
catgatttgctaaatgacatgcacaacaattttcttctctacatatacagaaatagatgtcccttgttaaacatattcaattttgcctcctgcttctagg |
49009623 |
T |
|
| Q |
207 |
gctctaaggaacaataagagaactcttgaaagcgtgtaaaaacaaaggaggccaacaaataaggttg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49009624 |
gctctaaggaacaataagagaactcttgaaagcgtgtaaaaacaaaggaggccaacaaataaggttg |
49009690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University