View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_high_11 (Length: 292)
Name: NF6771_high_11
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 5831614 - 5831876
Alignment:
| Q |
1 |
agagatatgaacccttttgtattaaatagagcaaaaaagcagaaccaaagagtgaatatacacc----agaaagtataacaagtaacttttcttattgag |
96 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5831614 |
agagatatgaacccttttgtattaaatagaataaaaaa-cagaaccaaagagtgaatatacacccaccagaaagtataacaagtaacttttcttattgag |
5831712 |
T |
|
| Q |
97 |
acaaaattcactgtagatatcaaatgtaataccaagagaagaaacaattccaaaatttgataattggagaacatgaaatagtacataacataaaaatgaa |
196 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5831713 |
acaaaattcactgtagatatcaaatgtgataccaagagaagaaacaattccaaaatttgataattggagaacatgaaatagtacataacataaaaatgaa |
5831812 |
T |
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| Q |
197 |
acattaacgtgcccaactcaacttgattattacattaatcaaaacaaattcaataacaaggaat |
260 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5831813 |
acattaacatgcccaactcaacttgattattacattaatcaaaacaaattcaataacaaggaat |
5831876 |
T |
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