View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_high_13 (Length: 254)
Name: NF6771_high_13
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 43148036 - 43148258
Alignment:
| Q |
22 |
acaatttcttattggtgcgatcttgtaaaaaaatatattattgtgatnnnnnnnnnnnnctaaaatagaggacatggaaatgctgctataagatcacaga |
121 |
Q |
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| T |
43148036 |
acaatttcttattggtgcgatcttgtaaaaaaatatattattgtgataaaaaaaa----ctaaaatagaggacatggaaatgctgctataagatcacaga |
43148131 |
T |
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| Q |
122 |
ttaaacaaccagaatttagtcatgcttaatgagtgagtatgaaggaagtgaggttcctgtcgtgattcaatttattctcaatcacaacggcttgaaaaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43148132 |
ttaaacaaccagaatttagtcatgcttaatgagtgagtatgaaggaagtgaggttcctgtcgtgattcaatttattctcaatcacaacggcttgaaaaat |
43148231 |
T |
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| Q |
222 |
gttaggaacggaattggaagtagaaat |
248 |
Q |
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| T |
43148232 |
gttaggaacggaattggaagtagaaat |
43148258 |
T |
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