View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_high_3 (Length: 531)
Name: NF6771_high_3
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 122 - 513
Target Start/End: Complemental strand, 5831304 - 5830914
Alignment:
| Q |
122 |
ttgtataacaaatcgtattaatatacggtgtggacaactttttggctgatcattttacatttccctttaacaaattgattaaaaaa-tgatctaaaaccc |
220 |
Q |
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| T |
5831304 |
ttgtataacaaaccgtattaatatacggtgtggacaactttttggctgttcattttacatttccctttaacaaattgattaaaaaaatgatctaaaaccc |
5831205 |
T |
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| Q |
221 |
ttaaaatatacttgattttccatctaaaccaccttacaaacttcgcatttcatcattttggaagccataatcaagaggtaagttatcaattctcctcatt |
320 |
Q |
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| T |
5831204 |
ttaaaatatacttgattttccatctaaaccaccttacaaacttcgcatttcaccattttggaagccataatcaagaggtaagttatcaattctcctcatt |
5831105 |
T |
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| Q |
321 |
ttcgtttttagttcacattttcctctgtttatgtccaacttgtacaattcgaatgttggttgtatctatattggccaatccaggcactacgcatgttatt |
420 |
Q |
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| T |
5831104 |
ttcgtttttagttcacattttcctctgtttatgtccaacttgtacaattcgaatgttggttgtatctatattggccaatccagacactatgcatgttatg |
5831005 |
T |
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| Q |
421 |
tttacgttgctttctcaggtttatgtgttgtatgtagagtttataattgtgtttggttttcctttgtttcaataatggagagaattcctgatg |
513 |
Q |
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| T |
5831004 |
ttttccttgctttctgaggttta--tgtcgtatgtagggtttataattgtgtttgcttttcccttgtttcaataatggagagaattactgatg |
5830914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 5831439 - 5831393
Alignment:
| Q |
78 |
gatgtgattaaattggttttgttttaattttgagtaatgttatattg |
124 |
Q |
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| T |
5831439 |
gatgtgattaaattggttttgttttaattttgagtaatgttatattg |
5831393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5831516 - 5831473
Alignment:
| Q |
1 |
ataagcacaaccacaaatgaataacatttaagaaccgtcaagtc |
44 |
Q |
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| T |
5831516 |
ataagcacaaccacaaatgaataacatttaagaacagtcaagtc |
5831473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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