View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6771_high_4 (Length: 465)

Name: NF6771_high_4

Description: NF6771

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6771_high_4

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 105; E-Value: 3e-52

Query Start/End: Original strand, 331 - 451

Target Start/End: Original strand, 39185319 - 39185439

Alignment:

Q	331	agcaatagcagcaagtctcagagacccaacagaacgatataaaccccaatcctaagagtcccaaactcgaattcgaagatacaacaacgaatctgaaaca	430	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39185319	agcaatagcagcaagtctcagagacccaacagaacgatagaaaccccaatcctaagagacccaaactcgaattcaaagatacaacaacgaatctgaaaca	39185418	T

Q	431	aaaacacaaaccacaggttct	451	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	39185419	aaaacacaaaacacaggttct	39185439	T

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Target: chr5; HSP #2

Raw Score: 97; E-Value: 2e-47

Query Start/End: Original strand, 94 - 190

Target Start/End: Original strand, 39185086 - 39185182

Alignment:

Q	94	aaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc	190	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39185086	aaaaaaccaagcaaccagcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc	39185182	T

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