View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6771_high_7 (Length: 387)
Name: NF6771_high_7
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6771_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 39753298 - 39752895
Alignment:
| Q |
1 |
ttgaccttttaatctgtcttaccaaaatcaaatattcttgtaagaatcatatataaatatgtagtagccctaagaagacaactgaattttcatattgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39753298 |
ttgaccttttaatctgtcttaccaaaatcaaatattcttgtaagaatcatatataaatatgtagcagccctaagaagacaactgaattttcatattgcat |
39753199 |
T |
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| Q |
101 |
aagtatgtgctgcgtttagcattcaaaagnnnnnnnnngttctttctacttcgttactagctaggtgtcaattcatagtaaaagttcgatcttattataa |
200 |
Q |
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| T |
39753198 |
aagtatgtgctgcgtttagcattcaaaagaaaaaaaaa-atctttctacttcgttactagcta-gtgtcaattcatagtaaaagttcgatcttattataa |
39753101 |
T |
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| Q |
201 |
tctcaaagacgaaattc-aannnnnnngaaaacatttgtaaaatgactatcagtatcattataataaatgataattattctttcccaaattttttaaaa- |
298 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
39753100 |
tctcaaagacgaaattcgattttttttgaaaacatttgtaaaatgactatcagtatcattataataaatgataattattctttccctaatttttaaaaaa |
39753001 |
T |
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| Q |
299 |
-----------------taaaaatagtaccagtagcaacatagcaggaggggtgagatcctatgatgtttgtgaagcctattgacatcatctctttgttt |
381 |
Q |
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||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39753000 |
aaaaatagttgacggttaaaaaatagtaccagttgcaacatagcaggaggtgagagatcctatgatgtttgtgaagcctattgacatcatctctttgttt |
39752901 |
T |
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| Q |
382 |
ccatca |
387 |
Q |
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|||||| |
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| T |
39752900 |
ccatca |
39752895 |
T |
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