View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6771_high_9 (Length: 304)

Name: NF6771_high_9
Description: NF6771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6771_high_9
NF6771_high_9
[»] chr4 (8 HSPs)
chr4 (16-291)||(26500267-26500544)
chr4 (16-291)||(10388383-10388650)
chr4 (16-291)||(1798968-1799235)
chr4 (16-276)||(17416501-17416759)
chr4 (27-263)||(40813783-40814017)
chr4 (64-281)||(37707395-37707607)
chr4 (146-267)||(23040625-23040744)
chr4 (89-148)||(42218980-42219039)
[»] chr1 (9 HSPs)
chr1 (16-284)||(38709776-38710041)
chr1 (16-235)||(4391480-4391696)
chr1 (85-222)||(39908882-39909016)
chr1 (16-104)||(4397462-4397550)
chr1 (55-281)||(38564732-38564951)
chr1 (49-149)||(13987577-13987677)
chr1 (49-162)||(17891454-17891567)
chr1 (27-165)||(28887712-28887852)
chr1 (56-96)||(30655569-30655609)
[»] chr2 (8 HSPs)
chr2 (16-291)||(4397422-4397693)
chr2 (16-275)||(37128915-37129172)
chr2 (22-165)||(41958173-41958315)
chr2 (27-285)||(42048218-42048475)
chr2 (27-162)||(4162022-4162157)
chr2 (49-163)||(44888344-44888458)
chr2 (49-165)||(9560813-9560929)
chr2 (59-133)||(23665439-23665513)
[»] chr3 (7 HSPs)
chr3 (20-291)||(16284883-16285151)
chr3 (16-279)||(45181422-45181683)
chr3 (16-291)||(17324149-17324423)
chr3 (27-291)||(2782071-2782334)
chr3 (49-149)||(3968575-3968675)
chr3 (49-149)||(4000130-4000230)
chr3 (56-155)||(30127212-30127311)
[»] chr8 (8 HSPs)
chr8 (16-291)||(46218-46493)
chr8 (16-291)||(38387729-38388007)
chr8 (16-278)||(1578970-1579228)
chr8 (49-163)||(40531176-40531288)
chr8 (49-153)||(544375-544479)
chr8 (27-291)||(31179830-31180089)
chr8 (16-128)||(4489717-4489828)
chr8 (57-136)||(36796574-36796654)
[»] chr5 (12 HSPs)
chr5 (16-266)||(35846938-35847187)
chr5 (16-215)||(42742328-42742523)
chr5 (20-280)||(29685654-29685911)
chr5 (16-215)||(3204173-3204372)
chr5 (27-206)||(2706963-2707139)
chr5 (16-136)||(39368831-39368951)
chr5 (64-281)||(18557366-18557577)
chr5 (16-165)||(25341638-25341788)
chr5 (16-60)||(25362318-25362362)
chr5 (205-291)||(39368730-39368815)
chr5 (240-291)||(25341516-25341567)
chr5 (16-51)||(40377649-40377684)
[»] chr7 (6 HSPs)
chr7 (57-291)||(2569977-2570208)
chr7 (16-151)||(6003328-6003463)
chr7 (49-165)||(27993561-27993677)
chr7 (49-163)||(35206718-35206832)
chr7 (49-165)||(46262144-46262260)
chr7 (240-281)||(24931780-24931821)
[»] chr6 (2 HSPs)
chr6 (49-177)||(7546454-7546581)
chr6 (58-271)||(12129057-12129264)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 26500267 - 26500544
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26500267 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagacttccgacacaagtcaaaaaggc 26500366  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtcc-aaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26500367 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 26500466  T
Q  215 ggcggaacaaaagcacaaagcgaat-agctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26500467 ggcggaacaaaagcacaaagcgaatcagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 26500544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 10388650 - 10388383
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||| |    
T  10388650 gacatcacaacagcctaaaaggacctgagtcataaacttgctcccgacctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtcaaaaagac 10388551  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    | ||||||||||||||| |||||||||| ||||||| || |||||  |||||| ||||  || |||||||| ||||||||||| |||||| |||||||||    
T  10388550 atccctcaactcacgaagcactagagcagacacctttacatgtcc-caaaacttgacc--catcaataacccgatgccaaaatccaaagagagagaaaag 10388454  T
Q  216 gcggaacaaaagcacaaagcgaatagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||||||||  ||| |||||||||     ||  || |||| || ||||| || |||||||||||||||||| |||||    
T  10388453 gcggaacagtagcgcaaagcgaa-----cgggcacaaactaaccaaaaaaatccaccaaatcaacctgcatcacca 10388383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 1799235 - 1798968
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||| ||||||||||||| |||| |||||||||||||| ||||| |||||||||||| | |  | ||||||||||  |||||||||||||||||    
T  1799235 gacatcacaatagcctaaaaggacctgagacacaaacttgctcctgacctagaatcaaaagcgtttggtcaacaagactccttacacaagtcaaaaaggc 1799136  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    |||||||||||||||||||||  ||||| |||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||    
T  1799135 acccctcaactcacgaaccaccggagcagacaccttaacctatcc-aaaaactcgacc--caccaataacccgatgccaaaatccaaagacagagaaaag 1799039  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    || |||||| ||| ||||| |||  |||||||||| ||      |||||| |||||||||| ||||||||| |||||    
T  1799038 gcagaacaatagcgcaaagtgaaccagctcgaacacaa------caaaaccagccaccaaaacaacctgcatcacca 1798968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 17416501 - 17416759
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||| ||||||||||||| |  |  | ||||| ||||| || ||||||||||||| ||||| ||||| || ||| |||||| | |||   ||||    
T  17416501 gacatcacaaaagcctaaaaggacataggcaaaaaactagctcctgatctcgaatcaaaagtgatcggcccactaggctctcgacaccaatcatttaggc 17416600  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    |||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||  |  ||||  |||||||| | | ||||||||||||||    
T  17416601 acccctcaactcacgaaccactagagtagacaccttaacctgtcc-aaaaactcggcccaca--ataaaccaaatgccaaattcctaagacagagaaaag 17416697  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaat 276  Q
    | | ||||| ||| |||||||||  |||||||||| ||||||||||||||||||||| ||||    
T  17416698 gtgaaacaatagcgcaaagcgaaccagctcgaacacaaacaaatcaaaacaagccacaaaat 17416759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 263
Target Start/End: Original strand, 40813783 - 40814017
Alignment:
Q  27 agcctaaaaggacttgagtcacaaacttg-ctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaac 125  Q
    |||||||||| || ||||||| ||| ||| ||||||| ||||||||||||| ||||| ||||| ||||||||||| ||| ||| |||||||||| ||||     
T  40813783 agcctaaaagaacctgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcacccttcaat 40813882  T
Q  126 tcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaa 225  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||| ||  |||||  |||| |||||| |||||| ||| ||||||||||| ||||||      
T  40813883 tcacgaaccactagagcagacaccttaacctatcc-aaaaactcggcc--caccataaaccagatgcc-aaattcgaaggcagagaaaaggtggaacagt 40813978  T
Q  226 agcacaaagcgaa-tagctcgaacaaaaacaaatcaaaa 263  Q
    ||| |||| ||||  |||||||| | ||||||| |||||    
T  40813979 agcgcaaaacgaaccagctcgaatataaacaaaccaaaa 40814017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 281
Target Start/End: Original strand, 37707395 - 37707607
Alignment:
Q  64 ctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacctgtccaaa 163  Q
    ||||||||||||| ||||| ||||| ||||||||||||||   |||||||||||||||||||||||||||||| |||||| |||||  || || ||||||    
T  37707395 ctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacaccaaaatctatccaaa 37707494  T
Q  164 aaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaat-agctcgaacaaaaacaaatcaaa 262  Q
    || ||||||||||  ||| |||| ||||||||  | |||||||||| |   || |||| |  || ||||| |||   |||||||||| ||||||||||||    
T  37707495 aa-ctcgacccac--caaaaaccagatgccaagct-caaagacagacac--ggtggaatagtagtacaaatcgatccagctcgaacagaaacaaatcaaa 37707588  T
Q  263 acaagccaccaaatcaacc 281  Q
     |||||||| |||||||||    
T  37707589 ccaagccacaaaatcaacc 37707607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 23040625 - 23040744
Alignment:
Q  146 caccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaa-tagctc 244  Q
    |||||||||||||| ||||| |||||||| |  ||| || | ||||||||||| || ||||||||||||| |||||||  ||| |||||||||  |||||    
T  23040625 caccttaacctgtctaaaaa-ctcgaccctc--caaaaatccgatgccaaaatccatagacagagaaaagacggaacagtagcgcaaagcgaaccagctc 23040721  T
Q  245 gaacaaaaacaaatcaaaacaag 267  Q
    ||||| ||| |||||||||||||    
T  23040722 gaacacaaataaatcaaaacaag 23040744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 42219039 - 42218980
Alignment:
Q  89 aagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||||||| ||| ||||| ||||| |||| ||||||||||||||||| |||||| ||||    
T  42219039 aagactcccaacataagtcgaaaagacaccactcaactcacgaaccaccagagcagacac 42218980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 38710041 - 38709776
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||||| |||||||||    
T  38710041 gacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagccca-aagactcccgaaacaaggcaaaaaggc 38709943  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  38709942 acccctcaactcacgaaccaccagaacaaacaccttaacctgtcc-aaaaactcgacc--caccaataacccgatgccaaaattcaaagacagagaaaag 38709846  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgc 284  Q
    ||||||||  ||| |||||| ||  ||||| |||| ||||||||||||||||||||||| ||||||||||    
T  38709845 gcggaacagtagcgcaaagcaaaccagctcaaacacaaacaaatcaaaacaagccaccatatcaacctgc 38709776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 4391696 - 4391480
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaagg 114  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| |    
T  4391696 gacatcacaacagcctaaaag-acctgagtcacaaaacttgctcccgaccccgaatcaaaagcgattggcccacaagactcccgacacaaggcaaaaatg 4391598  T
Q  115 cacccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 214  Q
    |||||||||||||||||||||| ||| || ||||||||||||| || |||| |||||||  |||||| |||| ||||||||||| |||||||||||||||    
T  4391597 cacccctcaactcacgaaccaccagaacagacaccttaacctgacc-aaaacctcgacc--caccaagaacccgatgccaaaatccaaagacagagaaaa 4391501  T
Q  215 ggcggaacaaaagcacaaagc 235  Q
    ||||||| |  ||||||||||    
T  4391500 ggcggaatagtagcacaaagc 4391480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 39908882 - 39909016
Alignment:
Q  85 ccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataa 184  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |  |||||||||    
T  39908882 ccacaagactcacgacacaagtcaaaaaagcacccctcaactcacgaaccaccagagcatacacctaaacctgtcc-aaaaactcgatc--caccaataa 39908978  T
Q  185 cctgatgccaaaattcaaagacagagaaaaggcggaac 222  Q
    || ||||||||||| ||||||||||||||||| |||||    
T  39908979 cccgatgccaaaatccaaagacagagaaaaggtggaac 39909016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 4397462 - 4397550
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaa 104  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| | || ||||||||||||||||    
T  4397462 gacatcacaacagcctaaaaggacctgagtcacaaacttactcccgaactcgaatcaaaagcgatcggcacataagactcccgacacaa 4397550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 281
Target Start/End: Complemental strand, 38564951 - 38564732
Alignment:
Q  55 gctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaac 154  Q
    |||||||| ||||||||||||||||||| ||||| |||||||  |||||| || ||||||||||||||||||||||| |||   ||||| |||||| |||    
T  38564951 gctcccgatctcgaatcaaaagcgatcggcccacgagactcctaacacaaatc-aaaaggcacccctcaactcacgacccatctgagcaaacacctaaac 38564853  T
Q  155 ctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaa-tagctcgaacaaaaa 253  Q
    ||||||   |||||||   | |||||| | ||||||||| |||||| ||||| ||||| ||| |||| |  |||||||| ||||  |||||||||  |||    
T  38564852 ctgtcc---aaactcg---cccaccaaaatcctgatgcc-aaattcgaagacggagaacaggtggaatagcagcacaaaacgaaccagctcgaacctaaa 38564760  T
Q  254 caaatcaaaacaagccaccaaatcaacc 281  Q
    || || |||||||||||| || ||||||    
T  38564759 catatgaaaacaagccactaactcaacc 38564732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 13987677 - 13987577
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||||| |||||| |||||||||| | ||||| ||| ||||||||||| |||  |||||||||||||||||||||||||| |||||| ||||    
T  13987677 aaactagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 13987578  T
Q  149 c 149  Q
    |    
T  13987577 c 13987577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 17891567 - 17891454
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    |||||||||||| | ||||||||||||| |||||  |||  |||||||| |||||  || | | ||||||||||||||||||| |||  |||| | ||||    
T  17891567 aaacttgctcccaatctcgaatcaaaagtgatcggtccatcagactcccaacacacatctacacggcacccctcaactcacgatccatcagagaagacac 17891468  T
Q  149 cttaacctgtccaa 162  Q
    ||||||||| ||||    
T  17891467 cttaacctgcccaa 17891454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 28887852 - 28887712
Alignment:
Q  27 agcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaag-tcaaaaaggcacccctcaa 124  Q
    |||||||||| || ||||||| ||| || || || || |||||||||| || | ||| ||||| |||||||||||||||  ||  |||||||||||||||    
T  28887852 agcctaaaagtacctgagtcaaaaaactagcgcctgatctcgaatcaagagtggtcggcccaccagactcccgacacaaaatcctaaaggcacccctcaa 28887753  T
Q  125 ctcacgaaccactagagcatacaccttaacctgtccaaaaa 165  Q
    |||| ||||||| |||||| |  ||||||| | ||||||||    
T  28887752 ctcaagaaccaccagagcagatcccttaacttatccaaaaa 28887712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 30655609 - 30655569
Alignment:
Q  56 ctcccgacctcgaatcaaaagcgatcgacccacaagactcc 96  Q
    ||||||| ||||||||||||||||||| ||||| |||||||    
T  30655609 ctcccgatctcgaatcaaaagcgatcggcccactagactcc 30655569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 4397422 - 4397693
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||| |||    
T  4397422 gacatcacaacaacctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagcccacaagactcccgagagaagtcaaaatggc 4397521  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    ||||||||||||||||||||| | |||| |||| | ||| ||||| ||||||||||||  ||||||||||   |||||||||| ||||||||||| ||||    
T  4397522 acccctcaactcacgaaccaccatagcagacacataaacttgtcc-aaaaactcgacc--caccaataactctatgccaaaatccaaagacagag-aaag 4397617  T
Q  216 gcggaacaaaagcacaaagcgaatagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||||||||  ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4397618 gcggaacagtagcgcaaagcgaacagctcgaacacaaacaaatcaaaacaagccaccaaatcaacctgcatcacca 4397693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 37128915 - 37129172
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  37128915 gacatcacaacatcctgaaaggacttgagtcacaaacttgttccggacctcgaatcaaaagcgatcggcccacaagactcctaacacaagtcaaaaaggc 37129014  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    |||  |||||||||||||||| |||||| |||||| |||||||||||||| ||| ||| ||  ||| || | |||| |||||| |||||||||| |||||    
T  37129015 acctatcaactcacgaaccaccagagcagacacctgaacctgtccaaaaa-ctcaaccaac--caaaaatccgatgtcaaaatccaaagacagaaaaaag 37129111  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaa 275  Q
    ||||||||  ||| | || ||||  |||||||||| ||||||||||||| || ||||||||    
T  37129112 gcggaacagtagcgccaaacgaaccagctcgaacacaaacaaatcaaaataatccaccaaa 37129172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 41958315 - 41958173
Alignment:
Q  22 acaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccct 121  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||||| |    
T  41958315 acaacagactaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagtggtcggcc-acaagactcctgacacaagtcaaaaaggcaccctt 41958217  T
Q  122 caactcacgaaccactagagcatacaccttaacctgtccaaaaa 165  Q
    |||||||| |||||| |||||| |||||||||||||||||||||    
T  41958216 caactcacaaaccaccagagcagacaccttaacctgtccaaaaa 41958173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 285
Target Start/End: Original strand, 42048218 - 42048475
Alignment:
Q  27 agcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaac 125  Q
    ||||||||||||||||||||| ||| || |||||||  ||||||||||||| ||||  ||||   ||||||||||| || |||| |||||||| ||||||    
T  42048218 agcctaaaaggacttgagtcaaaaaactggctcccggtctcgaatcaaaagtgatcagcccatcggactcccgacagaaatcaacaaggcacctctcaac 42048317  T
Q  126 tcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaa 225  Q
    ||||||||||| |||||| |||||||||| ||||| ||||||||| ||  ||||| || || || |||||| | | |||||||||  |||| |||||||     
T  42048318 tcacgaaccaccagagcagacaccttaacatgtcc-aaaaactcggcc--caccattatccagaggccaaattcctaagacagagggaaggtggaacaac 42048414  T
Q  226 agcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgca 285  Q
    |   |||| ||||  |||||||||| ||||||| ||||||||||||| |||||||| ||||    
T  42048415 aatgcaaatcgaaccagctcgaacataaacaaaccaaaacaagccacaaaatcaacatgca 42048475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 4162022 - 4162157
Alignment:
Q  27 agcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaac 125  Q
    ||||||||| ||| ||| ||| ||| || |||||||| ||||||||||||| ||||| ||||| |||||||| |||||| |||  | |||||||||||||    
T  4162022 agcctaaaaagacctgactcaaaaagctggctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacacaaatcacta-ggcacccctcaac 4162120  T
Q  126 tcacgaaccactagagcatacaccttaacctgtccaa 162  Q
    || |||||||| ||||||||||||| ||||| |||||    
T  4162121 tctcgaaccaccagagcatacacctcaacctatccaa 4162157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 44888344 - 44888458
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||| | ||||||| ||||  ||||| ||||| | |||||||||| || |||| ||||||||||||||||||||| |||| |||||| ||||    
T  44888344 aaactagctcccaatctcgaataaaaaatgatcggcccaccaaactcccgacataaatcaataaggcacccctcaactcacgacccaccagagcagacac 44888443  T
Q  149 cttaacctgtccaaa 163  Q
     | ||||||||||||    
T  44888444 gtaaacctgtccaaa 44888458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 9560813 - 9560929
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||||| ||||||||||||| |||||  |||| | |||  |||||||| |||  ||||||||||||||||||||||| || |||||| ||||    
T  9560813 aaactagctcccgatctcgaatcaaaagtgatcggtccaccaaactttcgacacaaatcatcaaggcacccctcaactcacgaactaccagagcagacac 9560912  T
Q  149 cttaacctgtccaaaaa 165  Q
    | |||| | ||||||||    
T  9560913 cataacttatccaaaaa 9560929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 23665439 - 23665513
Alignment:
Q  59 ccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaac 133  Q
    |||| ||||||||||||| ||||| ||||| |||||||||| |||| | |||| |||||||||||||||||||||    
T  23665439 ccgatctcgaatcaaaagtgatcggcccactagactcccgatacaaataaaaatggcacccctcaactcacgaac 23665513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 16285151 - 16284883
Alignment:
Q  20 tcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcaccc 119  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  16285151 tcacaacagcctaaaaggacctgagtcgcaaacttgctcccgacctcgaatcaaaagcgatcggcccacaagactccagacactagtcaaaaaggcaccc 16285052  T
Q  120 ctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcgg 219  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||  |||||||| |  |||||||||| |||||||||| |||||| ||     
T  16285051 ctcaactcacgaaccacaagagcagacaccttaacctgtcca-aaaactcgacc--caccaatagctcgatgccaaaa-tcaaagacagcgaaaagacga 16284956  T
Q  220 aacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||||  ||  ||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  16284955 aacagtagtgcaaagtgaaccagctcgaacacaaacaaatcaaaacaagccaccaaatcaacctgcatcacca 16284883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 45181683 - 45181422
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  45181683 gacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagcgattggcccacaagactcccgacaaaagtcaaaaaggc 45181584  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||  |||||||||||  |||||||||| |||||||||| |||||    
T  45181583 acccctcaactcacgaaccaccagagcagacaccctaacctgtcca-aaaactcgacc--caccaataacccaatgccaaaatccaaagacagaaaaaag 45181487  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaa 279  Q
    | |||| |  ||| |||| ||||  | |||||||| ||||||| |||| ||||||||||||||||    
T  45181486 gtggaatagtagcgcaaaacgaaccaactcgaacacaaacaaaacaaaccaagccaccaaatcaa 45181422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 17324149 - 17324423
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||| ||| ||||||||| | ||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||| ||||||||    
T  17324149 gacatcacaatagcttaaaaggacctaagtcagaaacttgctcccgacctcgaatcaaaagagatcggcccacaagactcacgacataagtaaaaaaggc 17324248  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    |||||||||||||||||||||  ||| | |||||| ||||| ||| ||||||||||||  ||||||||||| |||| |||||| ||||||| | ||||||    
T  17324249 acccctcaactcacgaaccaccggagtagacacctaaacctatcc-aaaaactcgacc--caccaataacccgatgtcaaaatccaaagacggggaaaag 17324345  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagcc-accaaatcaacctgcaacacca 291  Q
    |||||| |  |||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  17324346 gcggaatagtagcacaaagcgaaccagctcgaacacaaacaaatcaaaacaagccaaccaaatcaacctgcatcacca 17324423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 2782071 - 2782334
Alignment:
Q  27 agcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaac 125  Q
    |||||||||| |||| ||||| ||| || |||||||| ||  ||||||||| ||||| ||||| |||||| |||||||| |||  |||||||||||||||    
T  2782071 agcctaaaagaactttagtcaaaaaactggctcccgatctaaaatcaaaagtgatcgtcccaccagactctcgacacaaatcattaaggcacccctcaac 2782170  T
Q  126 tcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaa 225  Q
    |||| |||||| |||||| |||||||||||||||| ||||||||| ||  ||||| || |  ||||||||| |   ||| || |||||||| |||||||     
T  2782171 tcacaaaccaccagagcagacaccttaacctgtcc-aaaaactcggcc--caccattatctagatgccaaattcgtaagccaaagaaaaggtggaacaac 2782267  T
Q  226 agcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||| |||| ||||  ||||||| || ||||||| |||| ||||| || ||||||| ||||| |||||    
T  2782268 agcgcaaatcgaaccagctcgagcataaacaaaccaaatcaagctacaaaatcaaactgcatcacca 2782334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 3968575 - 3968675
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| ||||| || |||||| |||||||||| |  |||| ||||||||||||||| |||  |||||||||||||||||||||||||| |||||| ||||    
T  3968575 aaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 3968674  T
Q  149 c 149  Q
    |    
T  3968675 c 3968675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 4000230 - 4000130
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| ||||| || |||||| |||||||||| |  |||| ||||||||||||||| |||  |||||||||||||||||||||||||| |||||| ||||    
T  4000230 aaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 4000131  T
Q  149 c 149  Q
    |    
T  4000130 c 4000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 30127311 - 30127212
Alignment:
Q  56 ctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacc 155  Q
    ||||||| ||||||||||||||||||| | ||| |||||||||| |||| |||| |  ||||||||||| ||   |||||||| |||| |||||||||||    
T  30127311 ctcccgatctcgaatcaaaagcgatcggctcaccagactcccgaaacaaatcaatagagcacccctcaattcctaaaccactatagcagacaccttaacc 30127212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 46218 - 46493
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  46218 gacatcacaacaacctaaaaggacctgagtcagaaacttgctcccgacctggaatcaaaagcgattggcccacaagactcccgacacaagtcaaaaaggc 46317  T
Q  116 acccctcaactcacgaa-ccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 214  Q
    ||||||||||||||||| ||||  ||||| |||| | ||||||||| ||||||||||||  ||||||||||| |||| |||||| |||||||| |||| |    
T  46318 acccctcaactcacgaacccaccggagcagacacataaacctgtcc-aaaaactcgacc--caccaataacccgatgtcaaaatccaaagacaaagaata 46414  T
Q  215 ggcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagcc-accaaatcaacctgcaacacca 291  Q
    |||||||||  |||||||||||||   ||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  46415 ggcggaacagtagcacaaagcgaaccggctcgaacacaaacaaatcaaaacaagccaaccaaatcaacctgcatcacca 46493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 38388007 - 38387729
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||| | |||||||||||||||||| |||||||||||||    
T  38388007 gacatcacaatagcctaaaaggacctgagtcacaaacttgctcctgaccttgaatcaaaagtgattggcccacaagactcccgacataagtcaaaaaggc 38387908  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||  |||||||||||||||| |||||| |||||| ||||||||     
T  38387907 acccctcaactcacgaaccaccagagcaaacaccttaacctgtcca-aaaactcgacc--caccaataacctgatggcaaaatccaaagatagagaaaat 38387811  T
Q  216 gcggaacaaaagcacaaagcgaa-tagctcgaaca-----aaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    | ||||||| ||  |||||||||  ||||||||||     |||||||| ||||||||||||||||| |||||||||| ||||    
T  38387810 ggggaacaatagtgcaaagcgaaccagctcgaacacaaacaaaacaaaacaaaacaagccaccaaaccaacctgcaagacca 38387729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 1579228 - 1578970
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaa-acttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaagg 114  Q
    |||||||||||| |||| |||||| |||||||||| ||||||||||||| | |||||||||| ||||| |||||||||||||| |||||||| ||| |||    
T  1579228 gacatcacaacaacctagaaggacctgagtcacaagacttgctcccgactttgaatcaaaagtgatcggcccacaagactcccaacacaagtaaaagagg 1579129  T
Q  115 cacccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 214  Q
    || ||||||||||||||||||| |||||| |||||| ||||| ||| |||| || ||||  | |||| |||  ||||||||||| ||||||||||||| |    
T  1579128 catccctcaactcacgaaccaccagagcagacacctaaacctatcc-aaaaccttgacc--cgccaagaacacgatgccaaaatccaaagacagagaaca 1579032  T
Q  215 ggcggaacaaaagcacaaagcgaat-agctcgaacaaaaacaaatcaaaacaagccaccaaatca 278  Q
     || ||| |  ||| |||||||||| | |||||||| ||||   ||||| |||||||||||||||    
T  1579031 agcagaatagtagcgcaaagcgaatcaactcgaacacaaac---tcaaatcaagccaccaaatca 1578970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 40531288 - 40531176
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||||| ||||||||||||| ||||| ||||  |||||   ||||||| |||||| |||||||||||||||| || |||| |||||| ||||    
T  40531288 aaactagctcccgatctcgaatcaaaagtgatcggcccatcagactt--gacacaaatcaaaacggcacccctcaactcaagacccaccagagcagacac 40531191  T
Q  149 cttaacctgtccaaa 163  Q
    |||||||||||||||    
T  40531190 cttaacctgtccaaa 40531176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 544375 - 544479
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| ||| |||| |||||||| |||| ||||||||||| ||||||||||||||| |||||| |||| || ||||||||| | |||| |||||| ||||    
T  544375 aaactagcttccgatctcgaatctaaagtgatcgacccaccagactcccgacacaaatcaaaacggcatccgtcaactcacaatccaccagagcagacac 544474  T
Q  149 cttaa 153  Q
    |||||    
T  544475 cttaa 544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 31179830 - 31180089
Alignment:
Q  27 agcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaac 125  Q
    ||||||||||||| | ||||| ||| || |||||| | |||  |||||||| ||||| ||||| ||| |||| |||||| |||  ||||||||| | |||    
T  31179830 agcctaaaaggacctaagtcaaaaatctggctcccaatctcagatcaaaagtgatcggcccaccagattcccaacacaaatcattaaggcaccctt-aac 31179928  T
Q  126 tcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaa 225  Q
    ||| |||||||||||||| ||||| ||||||| || ||||||||| ||  ||||| || ||  |||||   |||||||| ||||||||||| ||| |||     
T  31179929 tcatgaaccactagagcagacacc-taacctg-cctaaaaactcggcc--caccattatccaaatgcc-ttattcaaaggcagagaaaaggtggagcaat 31180023  T
Q  226 agcacaaagcg-aatagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    |||  ||| || || |||| ||||| ||||||| ||||||||||||  ||||||||||||| |||||    
T  31180024 agcgaaaatcgaaacagcttgaacacaaacaaa-caaaacaagccatgaaatcaacctgcatcacca 31180089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 4489717 - 4489828
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||| ||||||||||||   |||| |||||||  |||| ||||| |||| |||| |||| | ||||| |||||||||||||||||||  ||| |    
T  4489717 gacatcacaaaagcctaaaaggatccgagttacaaactaactcc-gaccttgaataaaaaacgattgccccactagactcccgacacaagtcattaagac 4489815  T
Q  116 acccctcaactca 128  Q
    || ||||||||||    
T  4489816 actcctcaactca 4489828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 36796654 - 36796574
Alignment:
Q  57 tcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaa-ggcacccctcaactcacgaaccac 136  Q
    |||||| ||||||||||||| ||||| || || |  |||||||||||| | ||||| ||||| ||||||||||||||||||    
T  36796654 tcccgatctcgaatcaaaagtgatcggccaaccaatctcccgacacaaataaaaaaaggcactcctcaactcacgaaccac 36796574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 35847187 - 35846938
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtca-aaaagg 114  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||    
T  35847187 gacatcacagcagcctaaaaggacccgagtcacaaacgtgctcccgacctcgaatcaaaatcgatcggcccacaaaactcccgacacaagtcaaaaaagg 35847088  T
Q  115 cacccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaa 214  Q
    ||||| ||||||||| |||||| |||||| |||||||||| ||||| ||||||| ||||  ||||||||||| ||||||||||| |||||||| ||||||    
T  35847087 cacccatcaactcacaaaccaccagagcagacaccttaacatgtcc-aaaaacttgacc--caccaataacccgatgccaaaatccaaagacaaagaaaa 35846991  T
Q  215 ggcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaa 266  Q
    || ||||||| |||| ||||||||  |||||||||| ||||||||||||||||    
T  35846990 ggtggaacaatagcataaagcgaaccagctcgaacacaaacaaatcaaaacaa 35846938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 42742328 - 42742523
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42742328 gacatcacaacagcctaaaaggacatgagtcacaaacttgctcccgacctcgaatcaaaagcgatcg-cccacaagactcccgacacaagtcaaaaaggc 42742426  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaag 215  Q
    ||||| |||| |||||||||| |||||| |||||| ||||||| | ||||||| ||||  ||||||||||| ||||||||||| |||| |||||||||||    
T  42742427 accccacaacccacgaaccaccagagcagacacctaaacctgttc-aaaaacttgacc--caccaataacccgatgccaaaatccaaaaacagagaaaag 42742523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 29685911 - 29685654
Alignment:
Q  20 tcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcaccc 119  Q
    |||||| ||||||||||||  ||||||||||||| ||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||  |||| || |    
T  29685911 tcacaaaagcctaaaaggatctgagtcacaaactagctcccgacttcgaatcaaaagtgatcgacccattagactcccgacacaggtcattaaggtactc 29685812  T
Q  120 ctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcgg 219  Q
    ||||||||||||||||| |||||| || ||||||||||| | |||||||| |||  |||||||||||  |||||||| | ||||||||||||||||| ||    
T  29685811 ctcaactcacgaaccaccagagcagaccccttaacctgttc-aaaaactcaacc--caccaataaccatatgccaaattccaaagacagagaaaaggtgg 29685715  T
Q  220 aacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaac 280  Q
    ||||  | | ||||| |||  |||||||||| |||| |||||||||||||||| ||||||||    
T  29685714 aacagtaacgcaaagtgaaccagctcgaacacaaac-aatcaaaacaagccacaaaatcaac 29685654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 3204372 - 3204173
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    ||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||||| |||| |  |||||||||||  ||||||||| ||||||||    
T  3204372 gacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaaaacgattggtccacaagactct-gacacaagttaaaaaggc 3204274  T
Q  116 acccctcaactcacgaaccactagagcatacaccttaa----cctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagaga 211  Q
    |||||||||||||||| |||| ||||||||||||||||    |||| ||||||  ||||||||||  |||||||| ||||||||||||||||||||||||    
T  3204273 acccctcaactcacgagccaccagagcatacaccttaattaacctgaccaaaac-ctcgacccac--caataacccgatgccaaaattcaaagacagaga 3204177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 2707139 - 2706963
Alignment:
Q  27 agcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaact 126  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||   ||| |||||||||||||||||||  || |||||||||||||    
T  2707139 agcctaaaaggacatgagtcacaaactagctcccgacctcgaatcaaaagtgatcggttcactagactcccgacacaagtcattaaagcacccctcaact 2707040  T
Q  127 cacgaaccactagagcatacaccttaacctgtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagac 206  Q
    ||||||||||  |||||  ||||||||||||||| || ||||||   ||||||||||||| ||||||||| | |||||||    
T  2707039 cacgaaccaccggagcaggcaccttaacctgtcc-aagaactcg--gcacaccaataaccagatgccaaattccaaagac 2706963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 39368951 - 39368831
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||| ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |    
T  39368951 gacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccgacctcgaatcaaaagcggtcggcccacaagactcccgacacaagtcaaaaagac 39368852  T
Q  116 acccctcaactcacgaaccac 136  Q
    ||| |||||||||||||||||    
T  39368851 acctctcaactcacgaaccac 39368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 281
Target Start/End: Complemental strand, 18557577 - 18557366
Alignment:
Q  64 ctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacctgtccaaa 163  Q
    ||||||||||||| ||||| |||| | |||||||||||||| |||||| ||||||||||||||||||| |||| |||| | ||||||||||||| ||       
T  18557577 ctcgaatcaaaagtgatcggcccata-gactcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtagacaccttaacctgccc--- 18557482  T
Q  164 aaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcga-atagctcgaacaaaaacaaatcaaa 262  Q
    ||||||| ||  |||||||| ||  ||||| ||| || |||||| |||||||| ||||||| ||| |||| |||   ||||||||||| |||||| |||     
T  18557481 aaactcggcc--caccaatatcccaatgcc-aaactcgaagacaaagaaaaggtggaacaacagcgcaaatcgatccagctcgaacaacaacaaaccaac 18557385  T
Q  263 acaagccaccaaatcaacc 281  Q
    ||||||||| || ||||||    
T  18557384 acaagccacaaactcaacc 18557366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 25341788 - 25341638
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaa-cttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaagg 114  Q
    |||||||||| ||||||||||||| || |||| ||| ||  ||| | | ||| ||||||||| ||||| ||||| ||||||||||||||  |||  ||||    
T  25341788 gacatcacaaaagcctaaaaggacctgtgtcaaaaatctaactctcaatctcaaatcaaaagtgatcggcccaccagactcccgacacacatcatcaagg 25341689  T
Q  115 cacccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaa 165  Q
    ||||||| |||||||||| ||| |||||| | |||||||| |||| |||||    
T  25341688 cacccctgaactcacgaagcaccagagcagaaaccttaacatgtcgaaaaa 25341638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 25362362 - 25362318
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctccc 60  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  25362362 gacatcacaacagcctaaaaggacctgagtcacaaacttgctccc 25362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 39368815 - 39368730
Alignment:
Q  205 acagagaaaaggcggaacaaaagcacaaagcgaa-tagctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    |||||||||||||||||||||||| || ||| ||  |||||||||| ||||  ||||||||||||||||||| |||| |||| |||||    
T  39368815 acagagaaaaggcggaacaaaagcgcacagcaaaccagctcgaacacaaac--atcaaaacaagccaccaaaacaacttgcatcacca 39368730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 25341567 - 25341516
Alignment:
Q  240 agctcgaacaaaaacaaatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||||||| || ||||||||||||||||||||| |||| |||||||| |||||    
T  25341567 agctcgagcacaaacaaatcaaaacaagccacaaaattaacctgcatcacca 25341516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 40377684 - 40377649
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaa 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  40377684 gacatcacaacagcctaaaaggacctgagtcacaaa 40377649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 291
Target Start/End: Complemental strand, 2570208 - 2569977
Alignment:
Q  57 tcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacct 156  Q
    ||||||||||||||||||||||||   ||||| ||||||| |||||||||||||||||||||||||||||||||| | || |||||| ||||||||| ||    
T  2570208 tcccgacctcgaatcaaaagcgataagcccaccagactcctgacacaagtcaaaaaggcacccctcaactcacgagcaaccagagcaaacaccttaatct 2570109  T
Q  157 gtccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaa-tagctcgaacaaaaaca 255  Q
    | || |||| |||||||  ||||||||||| ||||||||||| ||||||||||||||||||||| ||  |||||||||||||  ||||||||| | ||||    
T  2570108 gacc-aaaacctcgacc--caccaataacccgatgccaaaatccaaagacagagaaaaggcggatcagtagcacaaagcgaaccagctcgaac-acaaca 2570013  T
Q  256 aatcaaaacaagccaccaaatcaacctgcaacacca 291  Q
    ||||| ||||| | ||||||| ||| |||| |||||    
T  2570012 aatcacaacaaactaccaaattaacttgcatcacca 2569977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 6003463 - 6003328
Alignment:
Q  16 gacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggc 115  Q
    |||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||    
T  6003463 gacatcacaacagcctaaaaggacctgagacacaaatttgcttccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggc 6003364  T
Q  116 acccctcaactcacgaaccactagagcatacacctt 151  Q
    | | ||||| |||| ||||||  ||||| |||||||    
T  6003363 atcactcaattcacaaaccaccggagcagacacctt 6003328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 27993561 - 27993677
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||||| ||||||||||||| |||||  |||| ||||||||||||||| ||| |||| |||||||||||||||||||||| |||||| ||||    
T  27993561 aaactagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactcacgaaccaccagagcaaacac 27993660  T
Q  149 cttaacctgtccaaaaa 165  Q
    | |||||| ||||||||    
T  27993661 cataacctatccaaaaa 27993677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 35206718 - 35206832
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||||| |||| |||||||| ||||| ||||| |||||||| |||||| | ||||||| ||||||||||||| || |||| |||||| ||||    
T  35206718 aaactagctcccgatctcggatcaaaagtgatcggcccaccagactcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcagacac 35206817  T
Q  149 cttaacctgtccaaa 163  Q
    |||||| ||||||||    
T  35206818 cttaacttgtccaaa 35206832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 46262144 - 46262260
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| |||||||| ||||||||||||| ||||| ||||| |||||||| |||| | ||||||||||||||||||||||||||| |||  ||| | ||||    
T  46262144 aaactagctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctcaactcacgaatcaccggagaagacac 46262243  T
Q  149 cttaacctgtccaaaaa 165  Q
    | ||| || ||||||||    
T  46262244 cataaactatccaaaaa 46262260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 24931821 - 24931780
Alignment:
Q  240 agctcgaacaaaaacaaatcaaaacaagccaccaaatcaacc 281  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  24931821 agctcgaacagaaacaaatcaaaacaagccacaaaatcaacc 24931780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 7546454 - 7546581
Alignment:
Q  49 aaacttgctcccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacac 148  Q
    ||||| ||| |||| ||||||||||||| |||||  |||| |||||| | |||| | | ||||||||||||||||||||||||||||| |||||| ||||    
T  7546454 aaactagcttccgatctcgaatcaaaagtgatcggtccaccagactctcaacaccaataaaaaaggcacccctcaactcacgaaccaccagagcagacac 7546553  T
Q  149 cttaacctgtccaaaaaactcgacccaca 177  Q
    | |||||| ||| ||||||||||||||||    
T  7546554 cataacctatcc-aaaaactcgacccaca 7546581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 271
Target Start/End: Complemental strand, 12129264 - 12129057
Alignment:
Q  58 cccgacctcgaatcaaaagcgatcgacccacaagactcccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacctg 157  Q
    ||||| ||||||||||||| |||||  |||  ||||||  ||||||| | || ||||||||| ||||||||||| |||| |||| | |||||| ||| ||    
T  12129264 cccgatctcgaatcaaaagtgatcggaccatcagactct-gacacaaattaataaggcacccatcaactcacgacccaccagagaagacacctaaacttg 12129166  T
Q  158 tccaaaaaactcgacccacaccaataacctgatgccaaaattcaaagacagagaaaaggcggaacaaaagcacaaagcgaat-agctcgaacaaaaacaa 256  Q
    ||||||   |||| |||||  || || || ||||||||| ||| ||||| ||||||||| ||||||   || |||| | ||  |||||||||||||||||    
T  12129165 tccaaa---ctcggcccac--cattatcccgatgccaaa-ttcgaagacggagaaaaggtggaacagtggcgcaaatcaaaccagctcgaacaaaaacaa 12129072  T
Q  257 atcaaaacaagccac 271  Q
    |||||||||||||||    
T  12129071 atcaaaacaagccac 12129057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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